Browse Element(s) Details


OsAffx.9086.1.S1_at

Description gb:NM_192991.1
DB_XREF= gi:34913065
GEN=P0013G02.25
TID=OsAffx.9086.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0013G02.25 (P0013G02.25), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g397902/11Esterase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g39760NANA1+22744434..22744883hypothetical protein
LOC_Os01g39770Os.45999.1.S1_at11/111+22754682..22757673Calcineurin B-like protein 10, putative, expressed
LOC_Os01g39770Os.6325.2.A1_x_at11/111+22754682..22757673Calcineurin B-like protein 10, putative, expressed
LOC_Os01g39770Os.6325.1.A1_at11/111+22754682..22757673Calcineurin B-like protein 10, putative, expressed
LOC_Os01g39770Os.45999.1.S1_x_at11/111+22754682..22757673Calcineurin B-like protein 10, putative, expressed
LOC_Os01g39770Os.6325.1.A1_x_at11/111+22754682..22757673Calcineurin B-like protein 10, putative, expressed
LOC_Os01g39780Os.57332.1.S1_at10/111+22762869..22765239expressed protein
LOC_Os01g39780OsAffx.20535.1.S1_at1/111+22762869..22765239expressed protein
LOC_Os01g39790Os.9190.1.S1_at11/111+22765891..22768813Esterase, putative, expressed
LOC_Os01g39790OsAffx.9086.1.S1_at2/111+22765891..22768813Esterase, putative, expressed
LOC_Os01g39800Os.9781.2.S1_x_at11/111+22773077..22776666Esterase, putative, expressed
LOC_Os01g39800Os.9781.2.S1_at11/111+22773077..22776666Esterase, putative, expressed
LOC_Os01g39800Os.9781.1.S1_at11/111+22773077..22776666Esterase, putative, expressed
LOC_Os01g39800Os.9781.1.S1_x_at10/111+22773077..22776666Esterase, putative, expressed
LOC_Os01g39810Os.27016.2.S1_at11/111+22777345..22783080mannosyltransferase, putative, expressed
LOC_Os01g39810Os.27016.3.S1_x_at11/111+22777345..22783080mannosyltransferase, putative, expressed
LOC_Os01g39810Os.27016.1.S2_x_at10/111+22777345..22783080mannosyltransferase, putative, expressed
LOC_Os01g39820Os.27382.2.S1_at3/111+22781987..22783194hypothetical protein
LOC_Os01g39830Os.18562.1.S1_at11/111+22793448..22799419Beta-galactosidase precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003824molecular_functioncatalytic activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9086.1.S1_at--74--7492Chr01:22770541..22770565 (25 bp)
GTGGAGGTTATTGCGACCTTTACCT
NONE
OsAffx.9086.1.S1_at--733--4592Chr01:22770553..22770577 (25 bp)
GCGACCTTTACCTGCAAAGATACTT
NONE
OsAffx.9086.1.S1_at--783--9871Chr01:22770573..22770597 (25 bp)
TACTTTAGAGTGCAGGTGGGCCCAA
NONE
OsAffx.9086.1.S1_at--1094--7471Chr01:22770588..22770612 (25 bp)
GTGGGCCCAATTATTGCAGCCGTTG
NONE
OsAffx.9086.1.S1_at--210--8171Chr01:22770920..22770944 (25 bp)
GGAAAATAACAATAGGCCCATCTCA
NONE
OsAffx.9086.1.S1_at--930--4191Chr01:22770945..22770969 (25 bp)
CCCGCGCAAGCCGAGGATCTGAATA
NONE
OsAffx.9086.1.S1_at--928--991Chr01:22770958..22770982 (25 bp)
AGGATCTGAATAATACCACCTCGGG
NONE
OsAffx.9086.1.S1_at--461--6211NONE
GAGGCTACAAATAGGAGCGTTGATC
NONE
OsAffx.9086.1.S1_at--932--4631Chr01:22771784..22771806 (23 bp)
GCGTTGATCGAGTTGCTGTTGTATA
NONE
OsAffx.9086.1.S1_at--820--5511Chr01:22771823..22771847 (25 bp)
GAAAATTACTCTGCCAACTGGACCA
NONE
OsAffx.9086.1.S1_at--53--9491Chr01:22771832..22771856 (25 bp)
TCTGCCAACTGGACCAATCAACTGC
NONE
Target Sequence 
GTGGAGGTTATTGCGACCTTTACCTGCAAAGATACTTTAGAGTGCAGGTGGGCCCAATTATTGCAGCCGTTGGATTCGGT
TTGGATGACCGAGATGCACGGGTGGAAAATAACAATAGGCCCATCTCACCCGCGCAAGCCGAGGATCTGAATAATACCAC
CTCGGGGAGTTGTGCGGGAGCGGGTGTGAGGAGGCTACAAATAGGAGCGTTGATCGAGTTGCTGTTGTATAAAATTGACG
CGTATCAGAAAATTACTCTGCCAACTGGACCAATCAACTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9086.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis