Browse Element(s) Details


OsAffx.9127.2.S1_x_at

Description tigr:9629.m04142
TID=OsAffx.9127.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4311011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g43050Os.37641.1.S1_at11/111+24886177..24895507CENP-C1, putative, expressed
LOC_Os01g43050Os.37641.2.S1_x_at10/111+24886177..24895507CENP-C1, putative, expressed
LOC_Os01g43060Os.33198.1.S1_at11/111+24895849..24898383expressed protein
LOC_Os01g43060OsAffx.13489.1.S1_at1/111+24895849..24898383expressed protein
LOC_Os01g43070Os.1500.2.S1_x_at10/111+24899830..24902546oxygen-evolving complex, putative, expressed
LOC_Os01g43070Os.1500.1.S1_at8/111+24899830..24902546oxygen-evolving complex, putative, expressed
LOC_Os01g43080Os.52056.1.S1_at11/111+24902574..24903707exonuclease family protein, expressed
LOC_Os01g43090Os.45885.1.S1_s_at11/111+24906478..24908925Auxin-induced protein PCNT115, putative, expressed
LOC_Os01g43100Os.32938.1.S1_x_at6/111+24911502..24916161protein phosphatase 2C, putative, expressed
LOC_Os01g43100Os.32938.1.S1_at2/111+24911502..24916161protein phosphatase 2C, putative, expressed
LOC_Os01g43110OsAffx.9127.2.S1_x_at11/111+24919360..24923065hypothetical protein
LOC_Os01g43120Os.26991.1.S1_x_at11/111+24925029..24928701DEAD/DEAH box helicase family protein, expressed
LOC_Os01g43120Os.52507.1.S1_at11/111+24925029..24928701DEAD/DEAH box helicase family protein, expressed
LOC_Os01g43120Os.26517.1.S1_at1/111+24925029..24928701DEAD/DEAH box helicase family protein, expressed
LOC_Os01g43130Os.47953.1.S1_at11/111+24929073..24932332DEAD/DEAH box helicase family protein, expressed
LOC_Os01g43140Os.41251.1.A1_at6/111+24938537..24942334Lipase family protein, expressed
LOC_Os01g43150Os.51057.1.S1_s_at11/111+24942951..24950000ATP-dependent metalloprotease FtsH family protein, expressed
LOC_Os01g43150Os.51057.1.S1_at10/111+24942951..24950000ATP-dependent metalloprotease FtsH family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9127.2.S1_x_at--815--6251Chr01:24920259..24920283 (25 bp)
GATGTGCGGCAAGCCTGCTGCAGAA
LOC_Os01g43110
OsAffx.9127.2.S1_x_at--59--1611Chr01:24920211..24920235 (25 bp)
AGCTGCGCCATCTTGGTTTCAGCGA
LOC_Os01g43110
OsAffx.9127.2.S1_x_at--53--9591Chr01:24920186..24920207 (22 bp)
TCTTGCATCCGCCTTGAAAGTGATT
LOC_Os01g43110
OsAffx.9127.2.S1_x_at--1079--10031Chr01:24919872..24919896 (25 bp)
TAGAGGTCCTGATTGGGCTCACAGC
LOC_Os01g43110
OsAffx.9127.2.S1_x_at--50--4431Chr01:24919834..24919858 (25 bp)
GCCATGCCTGCCTGCTTTAAAGATG
LOC_Os01g43110
OsAffx.9127.2.S1_x_at--982--6311Chr01:24919813..24919837 (25 bp)
GATGCACTGGAATCCTTAGCCAATA
LOC_Os01g43110
OsAffx.9127.2.S1_x_at--1056--311Chr01:24919788..24919812 (25 bp)
ATACAGCGGAGGCACTCGTTCAGAA
LOC_Os01g43110
OsAffx.9127.2.S1_x_at--544--7731Chr01:24919760..24919784 (25 bp)
GGTGGATACACTCAACTCCAGCAAG
LOC_Os01g43110
OsAffx.9127.2.S1_x_at--880--7191Chr01:24919696..24919720 (25 bp)
GTCGAGCTAGCGATTTCCATAGTAG
LOC_Os01g43110
OsAffx.9127.2.S1_x_at--713--10011Chr01:24919674..24919698 (25 bp)
TAGAAACGCGCACTCTTCCGTATGG
LOC_Os01g43110
OsAffx.9127.2.S1_x_at--324--8311Chr01:24919651..24919675 (25 bp)
GGCTATGCAGCCGACTTCAGGAAGA
LOC_Os01g43110
Target Sequence 
GATGTGCGGCAAGCCTGCTGCAGAATCTGTGCGCGCACTCCGGAGACGAGCTGCGCCATCTTGGTTTCAGCGACCATCTT
GCATCCGCCTTGAAAGTGATTTTGGAGAAAATACTGAATACCAAGGGAAAGCAGCTAGAGGTCCTGATTGGGCTCACAGC
GCAGATTCACAACGCCATGCCTGCCTGCTTTAAAGATGCACTGGAATCCTTAGCCAATAATACAGCGGAGGCACTCGTTC
AGAAGATGGTGGATACACTCAACTCCAGCAAGAAGCCGAGCCCTGAATGCCCCAGGATGAGAAGAGCAATAGTCGAGCTA
GCGATTTCCATAGTAGAAACGCGCACTCTTCCGTATGGCTATGCAGCCGACTTCAGGAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9127.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis