Browse Element(s) Details


OsAffx.9292.1.S1_at

Description gb:NM_192040.1
DB_XREF= gi:34911163
GEN=B1144G04.29
TID=OsAffx.9292.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) B1144G04.29 (B1144G04.29), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4876010/11THAP domain protein 4, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g48720Os.49113.1.S1_s_at11/111+28265649..28273872RNA polymerase III subunit RPC82 family protein, expressed
LOC_Os01g48720Os.48002.1.A1_x_at11/111+28265649..28273872RNA polymerase III subunit RPC82 family protein, expressed
LOC_Os01g48720Os.49113.1.S1_at9/111+28265649..28273872RNA polymerase III subunit RPC82 family protein, expressed
LOC_Os01g48740NANA1+28283505..28284436aspartyl protease family protein, putative, expressed
LOC_Os01g48750OsAffx.23718.1.S1_x_at11/111+28287210..28288387aspartyl protease family protein, putative, expressed
LOC_Os01g48750OsAffx.23718.1.S1_at11/111+28287210..28288387aspartyl protease family protein, putative, expressed
LOC_Os01g48750OsAffx.23718.2.S1_x_at4/111+28287210..28288387aspartyl protease family protein, putative, expressed
LOC_Os01g48760Os.4649.1.S1_at11/111+28288587..28292284THAP domain protein 4, putative, expressed
LOC_Os01g48760OsAffx.9292.1.S1_at10/111+28288587..28292284THAP domain protein 4, putative, expressed
LOC_Os01g48770Os.6731.1.S1_at10/111+28292556..2829496560S ribosomal protein L37a, putative, expressed
LOC_Os01g48780OsAffx.25095.1.S1_at10/111+28304980..28306407transposon protein, putative, unclassified
LOC_Os01g48780OsAffx.25095.3.S1_x_at1/111+28304980..28306407transposon protein, putative, unclassified
LOC_Os01g48780OsAffx.25095.5.S1_x_at1/111+28304980..28306407transposon protein, putative, unclassified
LOC_Os01g48790Os.9641.1.S1_x_at11/111+28310536..28317230YT521-B-like family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9292.1.S1_at--25--8471NONE
TGGCCGAGGTTCAGCTCCTTGGCGA
NONE
OsAffx.9292.1.S1_at--496--4791Chr01:28289854..28289878 (25 bp)
GCTCCTTGGCGATTTCAAGAACACT
LOC_Os01g48760
OsAffx.9292.1.S1_at--598--1411Chr01:28289871..28289895 (25 bp)
AGAACACTAAATTTGGCATCGTTGA
LOC_Os01g48760
OsAffx.9292.1.S1_at--1043--4971Chr01:28289886..28289910 (25 bp)
GCATCGTTGAGCTGAAGGTGCACAA
LOC_Os01g48760
OsAffx.9292.1.S1_at--598--5111Chr01:28289905..28289929 (25 bp)
GCACAATAAGTCTAGCTTGGCCCTC
LOC_Os01g48760
OsAffx.9292.1.S1_at--920--9771Chr01:28289911..28289935 (25 bp)
TAAGTCTAGCTTGGCCCTCATGAAG
LOC_Os01g48760
OsAffx.9292.1.S1_at--636--5151Chr01:28289958..28289982 (25 bp)
GCAAGCACATCCAAACGAAGTTTCA
LOC_Os01g48760
OsAffx.9292.1.S1_at--841--391Chr01:28290029..28290053 (25 bp)
ATCAGCACTAGAGGTCAACGCGCAG
LOC_Os01g48760
OsAffx.9292.1.S1_at--853--9691Chr01:28290043..28290067 (25 bp)
TCAACGCGCAGATATCCTGACCAAG
LOC_Os01g48760
OsAffx.9292.1.S1_at--68--1251Chr01:28290052..28290076 (25 bp)
AGATATCCTGACCAAGGCGCTACCT
LOC_Os01g48760
OsAffx.9292.1.S1_at--669--8391Chr01:28290067..28290091 (25 bp)
GGCGCTACCTTATGCAAGATTTCAA
LOC_Os01g48760
Target Sequence 
TGGCCGAGGTTCAGCTCCTTGGCGATTTCAAGAACACTAAATTTGGCATCGTTGAGCTGAAGGTGCACAATAAGTCTAGC
TTGGCCCTCATGAAGAATACAATTTTCCATGATAGAAGCAAGCACATCCAAACGAAGTTTCATTTTATTCATGATGCATT
GGAGAATGGAGAAATTCAGCTAGATTTCATCAGCACTAGAGGTCAACGCGCAGATATCCTGACCAAGGCGCTACCTTATG
CAAGATTTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9292.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis