Browse Element(s) Details


OsAffx.9323.1.S1_at

Description gb:NM_191902.1
DB_XREF= gi:34910887
GEN=P0003E08.10
TID=OsAffx.9323.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0003E08.10 (P0003E08.10), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g475009/11hypothetical protein
LOC_Os02g405405/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g47460Os.27161.1.S1_at11/111+27450336..27456209expressed protein
LOC_Os01g47470Os.33575.1.S1_at11/111+27457389..27461042Protein kinase domain containing protein, expressed
LOC_Os01g47480NANA1+27469124..27469357hypothetical protein
LOC_Os01g47490Os.53251.1.S1_at11/111+27471790..27475875negatively light-regulated protein, putative, expressed
LOC_Os01g47490Os.41790.1.S1_x_at11/111+27471790..27475875negatively light-regulated protein, putative, expressed
LOC_Os01g47500OsAffx.9323.1.S1_at9/111+27478840..27480106hypothetical protein
LOC_Os01g47500OsAffx.24662.1.S1_at5/111+27478840..27480106hypothetical protein
LOC_Os01g47500OsAffx.24662.1.S1_x_at3/111+27478840..27480106hypothetical protein
LOC_Os01g47500OsAffx.18095.1.S1_x_at1/111+27478840..27480106hypothetical protein
LOC_Os01g47500OsAffx.19265.1.S1_at1/111+27478840..27480106hypothetical protein
LOC_Os01g47510NANA1+27482373..27485525retrotransposon protein, putative, unclassified, expressed
LOC_Os01g47520OsAffx.21518.1.S1_s_at10/111+27486125..27489069hypothetical protein
LOC_Os01g47520OsAffx.21518.2.S1_at8/111+27486125..27489069hypothetical protein
LOC_Os01g47520OsAffx.21518.1.S1_at6/111+27486125..27489069hypothetical protein
LOC_Os01g47530Os.14999.1.S1_x_at11/111+27498135..27505279Protein kinase domain containing protein, expressed
LOC_Os01g47530Os.14999.2.S1_at11/111+27498135..27505279Protein kinase domain containing protein, expressed
LOC_Os01g47530Os.14999.3.S1_x_at10/111+27498135..27505279Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9323.1.S1_at--270--7512Chr01:27479294..27479318 (25 bp)
GTGGAGTCGGGTGCGTCACGTGGAG
LOC_Os01g47500
OsAffx.9323.1.S1_at--758--9671Chr01:27479309..27479333 (25 bp)
TCACGTGGAGTGTGGAGGCTGGCTC
LOC_Os01g47500
OsAffx.9323.1.S1_at--315--6211Chr01:27479323..27479347 (25 bp)
GAGGCTGGCTCAGCAGCGTGGAGAC
LOC_Os01g47500
OsAffx.9323.1.S1_at--652--3971Chr01:27479367..27479391 (25 bp)
CGGTGCGGTGTGTAGAGGCGTGGCC
LOC_Os01g47500
OsAffx.9323.1.S1_at--416--7731Chr01:27479435..27479459 (25 bp)
GGTGGCAGAGGTCGGTGCAGCACGT
LOC_Os01g47500
OsAffx.9323.1.S1_at--1103--7333Chr01:27479449..27479473 (25 bp)
GTGCAGCACGTGGAAGCGCGGCCGG
LOC_Os01g47500
OsAffx.9323.1.S1_at--1046--4992Chr01:27479476..27479500 (25 bp)
GCATGGATGGCTAGCCGAGCTTCGA
LOC_Os01g47500
OsAffx.9323.1.S1_at--892--852Chr01:27479482..27479506 (25 bp)
ATGGCTAGCCGAGCTTCGACGACCG
LOC_Os01g47500
OsAffx.9323.1.S1_at--212--8652Chr01:27479552..27479784 (25 bp)
TGTGGGCGACGGTGAAAACCTTGCT
LOC_Os01g47500
OsAffx.9323.1.S1_at--882--3832Chr01:27479996..27480170 (25 bp)
CTGCTCGCTGTTGGGTGTCGCTGCA
NONE
OsAffx.9323.1.S1_at--913--9333Chr01:27480163..27480187 (25 bp)
TCGCTGCAGTGGTGAAGTCGGCGCT
NONE
Target Sequence 
GTGGAGTCGGGTGCGTCACGTGGAGTGTGGAGGCTGGCTCAGCAGCGTGGAGACGCGGCTGGCAGCGGGAGGCCGGTGCG
GTGTGTAGAGGCGTGGCCGGCGGCGTGGAGGCTGGCGACGGCGCGTGGTTGTGCGGCCGGCGGTGGCAGAGGTCGGTGCA
GCACGTGGAAGCGCGGCCGGCGGCATGGATGGCTAGCCGAGCTTCGACGACCGGTCCCTTGGCGGCCTTGGCCGGTTCTG
GTCGGTGCAGCAGGGGAGTGTGGGCGACGGTGAAAACCTTGCTCCGGCTTCGGACGAGCGGCGACGGTGTTACGCGTCGT
GTCCTTCTTGGGGGCGTCGCTTCGGGGAAGTTCCTTACATCGATGACTATTGATGGTCCCTTCGGTTCAAAAGGTTTCTT
TCCTTGGCATTCGGCGAGGCCTAAACCTCTTGGGTCTGCTTCATTCTATGGTGGACGACACACTCTTCGGTTGCTTCTGC
GGATGAAGTCGGAGCTGCTCGCTGTTGGGTGTCGCTGCAGTGGTGAAGTCGGCGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9323.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis