Browse Element(s) Details


OsAffx.9532.1.S1_x_at

Description gb:NM_190654.1
DB_XREF= gi:34908391
GEN=P0529E05.22
TID=OsAffx.9532.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0529E05.22 (P0529E05.22), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g294882/11retrotransposon, putative, centromere-specific
LOC_Os04g094602/11hypothetical protein
LOC_Os12g135301/11hypothetical protein
LOC_Os04g271601/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g29430Os.23675.1.S1_at10/111+16822223..16830195pentatricopeptide, putative, expressed
LOC_Os01g29430Os.51910.1.S1_at1/111+16822223..16830195pentatricopeptide, putative, expressed
LOC_Os01g29430Os.51910.1.S1_x_at1/111+16822223..16830195pentatricopeptide, putative, expressed
LOC_Os01g29450NANA1+16831394..16837809retrotransposon protein, putative, unclassified
LOC_Os01g29469Os.54170.1.S1_at11/111+16838486..16845526Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os01g29469Os.16993.1.S1_at10/111+16838486..16845526Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os01g29488OsAffx.2119.1.S1_at11/111+16851634..16859548retrotransposon, putative, centromere-specific
LOC_Os01g29488OsAffx.9532.1.S1_at5/111+16851634..16859548retrotransposon, putative, centromere-specific
LOC_Os01g29488OsAffx.9652.1.S1_x_at2/111+16851634..16859548retrotransposon, putative, centromere-specific
LOC_Os01g29488OsAffx.9532.1.S1_x_at2/111+16851634..16859548retrotransposon, putative, centromere-specific
LOC_Os01g29488Os.52447.1.S1_at1/111+16851634..16859548retrotransposon, putative, centromere-specific
LOC_Os01g29488Os.52447.1.S1_x_at1/111+16851634..16859548retrotransposon, putative, centromere-specific
LOC_Os01g29488OsAffx.20947.1.S1_x_at1/111+16851634..16859548retrotransposon, putative, centromere-specific
LOC_Os01g29488Os.54774.1.S1_x_at1/111+16851634..16859548retrotransposon, putative, centromere-specific
LOC_Os01g29507OsAffx.1196.1.S1_at2/111+16867044..16872779hypothetical protein
LOC_Os01g29507OsAffx.15647.1.S1_at1/111+16867044..16872779hypothetical protein
LOC_Os01g29507OsAffx.31752.1.S1_at1/111+16867044..16872779hypothetical protein
LOC_Os01g29507OsAffx.1196.1.S1_x_at1/111+16867044..16872779hypothetical protein
LOC_Os01g29507OsAffx.17243.1.S1_at1/111+16867044..16872779hypothetical protein
LOC_Os01g29507Os.10626.4.A1_s_at1/111+16867044..16872779hypothetical protein
LOC_Os01g29530Os.52609.1.S1_at1/111+16878705..16884678retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g29530Os.46715.1.S1_at1/111+16878705..16884678retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g29530Os.51104.2.S1_at1/111+16878705..16884678retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g29530Os.46715.1.S1_x_at1/111+16878705..16884678retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9532.1.S1_x_at--163--89928Chr12:7057364..7057580 (25 bp)
TGAACGTGACTCTATCCATGCATGG
NONE
OsAffx.9532.1.S1_x_at--329--73744Chr12:7057563..7057584 (22 bp)
GTGACTCTATCCATGCATGGCAATT
NONE
OsAffx.9532.1.S1_x_at--47--155Chr05:23799517..23799803 (25 bp)
ATTATCTTGAAGCACCTCAACCCAA
NONE
OsAffx.9532.1.S1_x_at--657--26111Chr11:17763790..17763809 (20 bp)
AACCCGATGTCGTACACCAAGTCAT
NONE
OsAffx.9532.1.S1_x_at--6--2851Chr01:37114267..37114291 (25 bp)
AAGTCATATTGGCTGCATCACCTAA
NONE
OsAffx.9532.1.S1_x_at--33--90512Chr09:13438799..13438823 (25 bp)
TGCATCACCTAACCAAGTCTGACTC
NONE
OsAffx.9532.1.S1_x_at--969--2572Chr12:270983..271002 (20 bp)
AATCGTAGCCGATCCAGACTTCAGC
NONE
OsAffx.9532.1.S1_x_at--303--14198Chr12:1126539..1126793 (25 bp)
AGACTTCAGCCGATTCTTACTCTGT
NONE
OsAffx.9532.1.S1_x_at--317--95524Chr12:8142184..8142207 (24 bp)
TCTTACTCTGTTTCCGCGACAATCT
NONE
OsAffx.9532.1.S1_x_at--1107--4599Chr09:13438883..13438903 (21 bp)
GCGACAATCTTCATCTTCGATCCCG
NONE
OsAffx.9532.1.S1_x_at--932--6378Chr08:4126085..4126161 (25 bp)
GATCCCGCTTCAATCTAATCTTCAT
NONE
Target Sequence 
TGAACGTGACTCTATCCATGCATGGCAATTATCTTGAAGCACCTCAACCCAACCCGATGTCGTACACCAAGTCATATTGG
CTGCATCACCTAACCAAGTCTGACTCCAATTCCGCCGATCCAATCGTAGCCGATCCAGACTTCAGCCGATTCTTACTCTG
TTTCCGCGACAATCTTCATCTTCGATCCCGCTTCAATCTAATCTTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9532.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis