Browse Element(s) Details


OsAffx.9664.1.S1_at

Description gb:NM_189866.1
DB_XREF= gi:34906815
GEN=P0594D10.21
TID=OsAffx.9664.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein~predicted by GeneMark.hmm etc. (P0594D10.21), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g140101/11retrotransposon protein, putative, unclassified
LOC_Os06g191301/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g13970Os.38395.1.S1_at9/118+8369304..8377150retrotransposon protein, putative, unclassified
LOC_Os08g13970Os.38395.4.S1_x_at9/118+8369304..8377150retrotransposon protein, putative, unclassified
LOC_Os08g13970Os.38395.3.S1_x_at8/118+8369304..8377150retrotransposon protein, putative, unclassified
LOC_Os08g13970Os.38395.2.S1_x_at7/118+8369304..8377150retrotransposon protein, putative, unclassified
LOC_Os08g13970Os.38395.5.S1_at2/118+8369304..8377150retrotransposon protein, putative, unclassified
LOC_Os08g13980OsAffx.29184.1.S1_at11/118+8378227..8379456Glycosyl hydrolases family 16 protein, expressed
LOC_Os08g13980Os.45884.1.S1_x_at1/118+8378227..8379456Glycosyl hydrolases family 16 protein, expressed
LOC_Os08g13980Os.45884.1.S1_at1/118+8378227..8379456Glycosyl hydrolases family 16 protein, expressed
LOC_Os08g13990Os.6596.1.S1_at1/118+8383043..8386420pentatricopeptide, putative, expressed
LOC_Os08g14000Os.48441.1.S1_at10/118+8387933..8391462Endo-1,3;1,4-beta-D-glucanase precursor, putative, expressed
LOC_Os08g14010OsAffx.9664.1.S1_at1/118+8396530..8398375retrotransposon protein, putative, unclassified
LOC_Os08g14010Os.18665.1.S1_at1/118+8396530..8398375retrotransposon protein, putative, unclassified
LOC_Os08g14020OsAffx.18899.1.S1_at7/118+8399646..8403479Endo-1,3;1,4-beta-D-glucanase precursor, putative, expressed
LOC_Os08g14030NANA8+8405726..8406156hypothetical protein
LOC_Os08g14040OsAffx.29185.1.S1_at10/118+8407411..8408267hypothetical protein
LOC_Os08g14050OsAffx.29186.1.S1_at11/118+8409098..8412222expressed protein
LOC_Os08g14050Os.16414.1.S1_x_at8/118+8409098..8412222expressed protein
LOC_Os08g14060Os.10419.1.S1_a_at9/118+8412912..8414034Endo-1,3;1,4-beta-D-glucanase precursor, putative, expressed
LOC_Os08g14070Os.39123.1.S1_at10/118+8418100..8418930complex 1 family protein, putative, expressed
LOC_Os08g14070Os.39123.2.S1_s_at4/118+8418100..8418930complex 1 family protein, putative, expressed
LOC_Os08g14080OsAffx.29187.1.S1_at11/118+8421463..8421925hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9664.1.S1_at--777--5511Chr07:25674442..25674466 (25 bp)
GAAAATCTGGATTCGGCCGTCATCG
NONE
OsAffx.9664.1.S1_at--767--7573Chr08:8275723..8275746 (24 bp)
GGGCGGCGGGAAACTTCACCAGCAT
NONE
OsAffx.9664.1.S1_at--488--6011Chr07:25674345..25674369 (25 bp)
GAGAGCAGGTATGCCATGCACCTCT
NONE
OsAffx.9664.1.S1_at--476--46710Chr12:2447825..2447844 (20 bp)
GCTCGGGATGCCACGTTAGCGAAAC
NONE
OsAffx.9664.1.S1_at--480--5531Chr07:25673695..25673719 (25 bp)
GAAACAACCCACATATACTGCCAAG
NONE
OsAffx.9664.1.S1_at--933--9051Chr07:25673568..25673701 (25 bp)
TGCCAAGGGACCTCCGGGAAATCGT
NONE
OsAffx.9664.1.S1_at--156--7711Chr07:25673528..25673552 (25 bp)
GGTGGAGTATACATCGCCGAACAAT
NONE
OsAffx.9664.1.S1_at--697--2431Chr07:25673500..25673524 (25 bp)
AAAAGCAGCGTCTTTTCTTCTTCTC
NONE
OsAffx.9664.1.S1_at--1103--9531Chr07:25673477..25673501 (25 bp)
TCTTTTTCCAATTGCAAACGGCCGC
NONE
OsAffx.9664.1.S1_at--913--2371Chr07:25673462..25673486 (25 bp)
AAACGGCCGCATTTGGACATAAAAG
NONE
OsAffx.9664.1.S1_at--337--911Chr07:25673212..25673236 (25 bp)
AGGCTGCATACACGCTAGATCAATC
NONE
Target Sequence 
GAAAATCTGGATTCGGCCGTCATCGGCGACGGCGACGGCCGGGCGGCGGGAAACTTCACCAGCATGGCCAAATCGACGGC
GCCGTCGACGTGGAGTGGAGAGCAGGTATGCCATGCACCTCTACTCCTAGCCCTAGGTCGCTCTGCGTGCTGTTCTTCTC
GCCGCTGGTTCCCGCCGCCGTCGCACTCATCAGAGGAGCCCAGCGTGGTGGCGCGCCGCAGCGACGGGAGCGGACGGAGC
TCCGGGCTCGGGATGCCACGTTAGCGAAACAACCCACATATACTGCCAAGGGACCTCCGGGAAATCGTTCGGAGATGTAC
TGCGGTGGAGTATACATCGCCGAACAATCTGAAAAGCAGCGTCTTTTCTTCTTCTCTTTTTCCAATTGCAAACGGCCGCA
TTTGGACATAAAAGTTGCCATTGCAACTCATTTCGGCAATTGCAACGAGAATAACCGTTTGTTAGAAAAGGCTGCATACA
CGCTAGATCAATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9664.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis