Browse Element(s) Details


OsAffx.9743.1.S1_x_at

Description gb:NM_189365.1
DB_XREF= gi:34905813
GEN=P0483G10.11
TID=OsAffx.9743.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0483G10.11 (P0483G10.11), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g360601/11Endoglucanase 1 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g35990OsAffx.18003.1.S1_at11/119+20736566..20741141expressed protein
LOC_Os09g36000Os.49630.1.A1_at8/119+20740993..20742395expressed protein
LOC_Os09g36010OsAffx.30146.2.S1_x_at11/119+20742675..20743856hypothetical protein
LOC_Os09g36010OsAffx.30146.1.S1_s_at8/119+20742675..20743856hypothetical protein
LOC_Os09g36010OsAffx.30146.3.S1_at1/119+20742675..20743856hypothetical protein
LOC_Os09g36020OsAffx.31478.1.S1_at11/119+20744598..20748451EAP30 family protein, expressed
LOC_Os09g36030Os.22608.1.S1_s_at11/119+20749634..20750983Aldolase, putative, expressed
LOC_Os09g36030Os.22608.1.S1_at11/119+20749634..20750983Aldolase, putative, expressed
LOC_Os09g36040Os.6854.1.S1_at11/119+20751248..20754166Rhodanese-like domain containing protein, expressed
LOC_Os09g36040OsAffx.18004.1.S1_x_at11/119+20751248..20754166Rhodanese-like domain containing protein, expressed
LOC_Os09g36050OsAffx.6490.1.S1_at11/119+20756459..20756899hypothetical protein
LOC_Os09g36060Os.54812.1.S1_at11/119+20763721..20768090Endoglucanase 1 precursor, putative, expressed
LOC_Os09g36060OsAffx.9743.1.S1_x_at1/119+20763721..20768090Endoglucanase 1 precursor, putative, expressed
LOC_Os09g36070OsAffx.18005.1.S1_at11/119+20768152..20770338Cytochrome P450 family protein
LOC_Os09g36080Os.11426.2.S1_x_at2/119+20773802..20775749Cytochrome P450 family protein, expressed
LOC_Os09g36090Os.13470.1.S1_at11/119+20777988..20786312Plus-3 domain containing protein, expressed
LOC_Os09g36090OsAffx.30147.1.S1_at11/119+20777988..20786312Plus-3 domain containing protein, expressed
LOC_Os09g36090Os.52012.1.S1_x_at10/119+20777988..20786312Plus-3 domain containing protein, expressed
LOC_Os09g36090Os.46045.2.S1_x_at1/119+20777988..20786312Plus-3 domain containing protein, expressed
LOC_Os09g36100Os.11928.1.S1_at11/119+20787061..20789982expressed protein
LOC_Os09g36100Os.47993.1.S1_x_at11/119+20787061..20789982expressed protein
LOC_Os09g36100OsAffx.30148.1.S1_s_at11/119+20787061..20789982expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0007389biological_processpattern specification
GO:0042547biological_processcell wall modification during multidimensional cell growth
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
GO:0008810molecular_functioncellulase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9743.1.S1_x_at--903--9351Chr01:42729142..42729166 (25 bp)
TCGAAGTAGCCGCTGCTGGAGCCAT
NONE
OsAffx.9743.1.S1_x_at--125--9131Chr01:42729155..42729179 (25 bp)
TGCTGGAGCCATGCAAGCAGCGCCT
NONE
OsAffx.9743.1.S1_x_at--395--7551Chr01:42729327..42729351 (25 bp)
GGGCCACGTGCGTACTGGGAGCGAG
NONE
OsAffx.9743.1.S1_x_at--165--1331Chr01:42729427..42729450 (24 bp)
AGAGGCTAGCGGCACTGCGTTTTGT
NONE
OsAffx.9743.1.S1_x_at--1107--1971Chr01:42729440..42729526 (25 bp)
ACTGCGTTTTGTGTGCTGCTTGCTA
NONE
OsAffx.9743.1.S1_x_at--471--10832Chr09:20763836..20763859 (23 bp)
TTGTGTGCTGCTTGCTACTGGCGCC
LOC_Os09g36060
OsAffx.9743.1.S1_x_at--239--1951Chr01:42729536..42729560 (25 bp)
ACGGCGCCATTGGTAGTGGCGGCGA
NONE
OsAffx.9743.1.S1_x_at--522--4091Chr01:42729558..42729582 (25 bp)
CGACGCGGCATGACTACGGCGACGC
NONE
OsAffx.9743.1.S1_x_at--779--6751Chr01:42729589..42729613 (25 bp)
GTTCACCGCCACGACTATGGATGCG
NONE
OsAffx.9743.1.S1_x_at--608--4411Chr01:42729596..42729620 (25 bp)
GCCACGACTATGGATGCGCCAGTAG
NONE
OsAffx.9743.1.S1_x_at--868--3331Chr01:42729598..42729622 (25 bp)
CACGACTATGGATGCGCCAGTAGAC
NONE
Target Sequence 
TCGAAGTAGCCGCTGCTGGAGCCATGCAAGCAGCGCCTCCGCCGGGAGCGGGAGCAAGCGGAGCGGCGGCGTCGGCGGGC
GAGGGCGGCGGCGTCGGCGGGCGAGGGCGGCGGCGGAGCGGCGACGGCGGGCGAGCAGCGGCTCCGGACGCGGGCGGAGC
AGAGGAGCGGGCAAGCGGGTGGGAGGGGCCACGTGCGTACTGGGAGCGAGGCCGACGGCGAGCGCGCGCGAAGAAGGAGG
AGGAGGGTGGCCGGTGGCGAACGCACGCGGAGAGGGAGGAGGCGAAGAGGCTAGCGGCACTGCGTTTTGTGTGCTGCTTG
CTACTGGCGCCCACGGCGCCATTGGTAGTGGCGGCGACGCGGCATGACTACGGCGACGCGCTGGCGTTCACCGCCACGAC
TATGGATGCGCCAGTAGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9743.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis