Browse Element(s) Details


OsAffx.9796.1.S1_x_at

Description gb:NM_189120.1
DB_XREF= gi:34905323
GEN=OJ9990_A01.10
TID=OsAffx.9796.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OJ9990_A01.10 (OJ9990_A01.10), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0664011/11expressed protein
LOC_Os04g514601/11xyloglucan endotransglucosylase/hydrolase protein 15precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g06580Os.28943.1.S1_x_at1/118+3708558..3711635retrotransposon protein, putative, unclassified
LOC_Os08g06590OsAffx.5724.1.S1_x_at11/118+3713914..3714991hypothetical protein
LOC_Os08g06590OsAffx.5724.2.S1_at11/118+3713914..3714991hypothetical protein
LOC_Os08g06590OsAffx.5724.1.S1_at8/118+3713914..3714991hypothetical protein
LOC_Os08g06600Os.36139.1.S1_at11/118+3716022..3719897Nuf2 family protein, expressed
LOC_Os08g06610Os.12047.1.S1_a_at11/118+3720558..3721117Mps one binder kinase activator-like 1A, putative
LOC_Os08g06620OsAffx.16857.1.S1_s_at11/118+3721757..3722500expressed protein
LOC_Os08g06630Os.3407.1.S1_a_at10/118+3726171..3730177Sigma-70 region 2 family protein, expressed
LOC_Os08g06640OsAffx.9796.1.S1_x_at11/118+3733845..3739068expressed protein
LOC_Os08g06640Os.17547.1.S1_at9/118+3733845..3739068expressed protein
LOC_Os08g06659Os.31625.1.S1_at11/118+3741880..3743529expressed protein
LOC_Os08g06659OsAffx.29067.1.S1_s_at11/118+3741880..3743529expressed protein
LOC_Os08g06659Os.31625.2.S1_x_at11/118+3741880..3743529expressed protein
LOC_Os08g06680OsAffx.5725.1.S1_at11/118+3744313..3744615hypothetical protein
LOC_Os08g06690OsAffx.21982.1.S1_x_at11/118+3746663..3748451hypothetical protein
LOC_Os08g06690OsAffx.1199.1.S1_at1/118+3746663..3748451hypothetical protein
LOC_Os08g06700Os.31736.1.S1_at11/118+3750972..3754484expressed protein
LOC_Os08g06700OsAffx.21982.1.S1_x_at5/118+3750972..3754484expressed protein
LOC_Os08g06710Os.30615.1.S1_at11/118+3756930..3758452F-box domain containing protein, expressed
LOC_Os08g06720Os.31718.2.S1_at3/118+3761103..3762924hypothetical protein
LOC_Os08g06720Os.31718.2.S1_x_at2/118+3761103..3762924hypothetical protein
LOC_Os08g06720Os.8726.3.S1_at1/118+3761103..3762924hypothetical protein
LOC_Os08g06720OsAffx.1199.1.S1_at1/118+3761103..3762924hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0007568biological_processaging
GO:0009664biological_processcell wall organization and biogenesis (sensu Magnoliophyta)
GO:0009740biological_processgibberellic acid mediated signaling
GO:0009832biological_processcell wall biosynthesis (sensu Magnoliophyta)
GO:0005618cellular_componentcell wall
GO:0005737cellular_componentcytoplasm
GO:0016762molecular_functionxyloglucan:xyloglucosyl transferase activity
GO:0016798molecular_functionhydrolase activity, acting on glycosyl bonds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9796.1.S1_x_at--268--1852Chr08:3733993..3734017 (25 bp)
ACGCAGGGCGGGTCGTCGTCGCCGG
LOC_Os08g06640
OsAffx.9796.1.S1_x_at--45--8011Chr08:3734020..3734153 (25 bp)
GGATGGATTCCGGTGTTCTTCACTT
LOC_Os08g06640
OsAffx.9796.1.S1_x_at--458--831Chr08:3734022..3734155 (25 bp)
ATGGATTCCGGTGTTCTTCACTTCT
LOC_Os08g06640
OsAffx.9796.1.S1_x_at--172--6571Chr08:3734025..3734158 (25 bp)
GATTCCGGTGTTCTTCACTTCTTCT
LOC_Os08g06640
OsAffx.9796.1.S1_x_at--708--7751Chr08:3734140..3734164 (25 bp)
GGTGTTCTTCACTTCTTCTCCGTTG
LOC_Os08g06640
OsAffx.9796.1.S1_x_at--335--10511Chr08:3734147..3734171 (25 bp)
TTCACTTCTTCTCCGTTGCTGAGTT
LOC_Os08g06640
OsAffx.9796.1.S1_x_at--1137--9491Chr08:3734156..3734180 (25 bp)
TCTCCGTTGCTGAGTTCTGCCAAGA
LOC_Os08g06640
OsAffx.9796.1.S1_x_at--687--9291Chr08:3734158..3734182 (25 bp)
TCCGTTGCTGAGTTCTGCCAAGAAA
LOC_Os08g06640
OsAffx.9796.1.S1_x_at--552--6671Chr08:3734161..3734185 (25 bp)
GTTGCTGAGTTCTGCCAAGAAACCA
LOC_Os08g06640
OsAffx.9796.1.S1_x_at--679--3831Chr08:3734165..3734189 (25 bp)
CTGAGTTCTGCCAAGAAACCAACCA
LOC_Os08g06640
OsAffx.9796.1.S1_x_at--935--5551Chr08:3734179..3734200 (22 bp)
GAAACCAACCAATTTTGACAGGATA
LOC_Os08g06640
Target Sequence 
ACGCAGGGCGGGTCGTCGTCGCCGGCGGGATGGATTCCGGTGTTCTTCACTTCTTCTCCGTTGCTGAGTTCTGCCAAGAA
ACCAACCAATTTTGACAGGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9796.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis