Browse Element(s) Details


OsAffx.9980.1.S1_at

Description gb:NM_188117.1
DB_XREF= gi:34903317
TID=OsAffx.9980.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) unnamed protein product (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g171301/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g17070Os.50.3.S1_at11/111+9813599..9819528expressed protein
LOC_Os01g17070Os.50.2.S1_x_at11/111+9813599..9819528expressed protein
LOC_Os01g17070Os.50.3.S1_x_at11/111+9813599..9819528expressed protein
LOC_Os01g17070Os.50.1.S1_at11/111+9813599..9819528expressed protein
LOC_Os01g17070Os.43672.1.S1_x_at9/111+9813599..9819528expressed protein
LOC_Os01g17070Os.43672.1.S1_at7/111+9813599..9819528expressed protein
LOC_Os01g17080OsAffx.22179.1.S1_at11/111+9819877..9822748transposon protein, putative, Mutator sub-class
LOC_Os01g17080OsAffx.23752.1.S1_at5/111+9819877..9822748transposon protein, putative, Mutator sub-class
LOC_Os01g17090OsAffx.2023.1.S1_at11/111+9824992..9825333hypothetical protein
LOC_Os01g17100OsAffx.20501.2.S1_at11/111+9828237..9828572hypothetical protein
LOC_Os01g17100OsAffx.20501.2.S1_s_at11/111+9828237..9828572hypothetical protein
LOC_Os01g17100OsAffx.20501.2.S1_x_at11/111+9828237..9828572hypothetical protein
LOC_Os01g17110OsAffx.20501.1.S1_at3/111+9832236..9832987retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g17110OsAffx.21756.3.S1_x_at1/111+9832236..9832987retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g17120OsAffx.22947.5.S1_at11/111+9835525..9839623retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g17120OsAffx.22947.5.S1_x_at11/111+9835525..9839623retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g17120OsAffx.22947.1.S1_x_at4/111+9835525..9839623retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g17120OsAffx.22947.2.S1_x_at2/111+9835525..9839623retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g17120OsAffx.22947.3.S1_x_at1/111+9835525..9839623retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g17130OsAffx.9980.1.S1_at1/111+9842578..9845639retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g17130OsAffx.16307.1.S1_at1/111+9842578..9845639retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g17150Os.7948.1.S1_a_at11/111+9856128..9857526expressed protein
LOC_Os01g17160Os.43666.1.S1_at11/111+9863218..9867642DHHC zinc finger domain containing protein, expressed
LOC_Os01g17160Os.43666.2.S1_x_at11/111+9863218..9867642DHHC zinc finger domain containing protein, expressed
LOC_Os01g17160OsAffx.22177.1.S1_x_at3/111+9863218..9867642DHHC zinc finger domain containing protein, expressed
LOC_Os01g17160OsAffx.22177.1.S1_at3/111+9863218..9867642DHHC zinc finger domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9980.1.S1_at--312--5831Chr01:9845235..9845259 (25 bp)
GACCTGCCTTTTCTTAAATATCTCC
LOC_Os01g17130
OsAffx.9980.1.S1_at--54--6331Chr01:9848947..9848971 (25 bp)
GATGCAACCAGAAGCAGTCCACGGG
NONE
OsAffx.9980.1.S1_at--1121--8911Chr01:9848993..9849017 (25 bp)
TGAGCCTAACAACGATGATCCCAAC
NONE
OsAffx.9980.1.S1_at--628--391Chr01:9849083..9849107 (25 bp)
ATCACCTTCTGATTTGCACGTTCAG
NONE
OsAffx.9980.1.S1_at--324--6751Chr01:9849102..9849124 (23 bp)
GTTCAGCTGGCAAGTGGCAACACCC
NONE
OsAffx.9980.1.S1_at--848--7491Chr01:9851722..9851746 (25 bp)
GTGGTGTGTGCTTAGAGGCTTCTAC
NONE
OsAffx.9980.1.S1_at--504--5951Chr01:9851773..9851797 (25 bp)
GAGCAACACACAGCTGCATGAGCGT
NONE
OsAffx.9980.1.S1_at--946--9051Chr01:9851787..9851811 (25 bp)
TGCATGAGCGTGACTACACCGGCAA
NONE
OsAffx.9980.1.S1_at--1150--371Chr01:9851817..9851841 (25 bp)
ATCACAGTGGCATCATCGCAAGACA
NONE
OsAffx.9980.1.S1_at--1005--8431Chr01:9851879..9851903 (25 bp)
GGCCATTCTCAACGTAGAGCTGTCA
NONE
OsAffx.9980.1.S1_at--943--1611Chr01:9851896..9851920 (25 bp)
AGCTGTCACCTATTGGATATACTGT
NONE
Target Sequence 
GACCTGCCTTTTCTTAAATATCTCCTCATACATAAAATGGACAAATACACAGTAAAATATCTCCTTAAGAAGACTACGAC
AGATGATGGCTGGAATTGGAGAAAGTATAGTGAAAAGGATTTACTTGGCTCCAAGTACAAAAGATCATGGTACAGATGCA
ACCAGAAGCAGTCCACGGGGTGCGTGGCAAGGAAGATTGTTGAGCCTAACAACGATGATCCCAACACATGGTTGGTAACA
TACTTATACGAGCACAACCATAAACAAGAAGCTAGGCCCTGCGACAAGCCATCACCTTCTGATTTGCACGTTCAGCTGGC
AAGTGGCAACACCCAGTGGTGTGTGCTTAGAGGCTTCTACGGTGGAGTGAGGCAGATGACGGTGGGGAGCAACACACAGC
TGCATGAGCGTGACTACACCGGCAACGCAAATCACAGTGGCATCATCGCAAGACAGACATGGATCGAGATGCTCCGGCGC
GGCTGCACGGCCGGCCATTCTCAACGTAGAGCTGTCACCTATTGGATATACTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9980.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis