Browse Element(s) Details


Os.10088.1.S1_a_at

Description gb:AK101890.1
DB_XREF= gi:32987099
TID=Os.10088.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10088 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0492G09.26 (P0492G09.26), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033070N06, full insert sequence.
FL= gb:AK101890.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7101011/11Lipase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g70960Os.6336.1.S1_at11/111+41401280..41406111Cytochrome c1, heme protein, mitochondrial precursor, putative, expressed
LOC_Os01g70960Os.6336.2.S1_at10/111+41401280..41406111Cytochrome c1, heme protein, mitochondrial precursor, putative, expressed
LOC_Os01g70960OsAffx.26985.1.S1_x_at1/111+41401280..41406111Cytochrome c1, heme protein, mitochondrial precursor, putative, expressed
LOC_Os01g70970Os.18382.1.S1_at11/111+41406321..41408855Protein kinase domain containing protein, expressed
LOC_Os01g70970OsAffx.12696.1.S1_at1/111+41406321..41408855Protein kinase domain containing protein, expressed
LOC_Os01g70980Os.9236.1.S1_at11/111+41412751..41415017expressed protein
LOC_Os01g70990OsAffx.21835.1.S1_x_at11/111+41417152..41417529Glutaredoxin-like family protein
LOC_Os01g70990OsAffx.21835.1.S1_at11/111+41417152..41417529Glutaredoxin-like family protein
LOC_Os01g71000Os.38163.1.S1_at11/111+41422760..41427216Serine/threonine-protein kinase RLCKVII, putative, expressed
LOC_Os01g71010Os.10088.1.S1_a_at11/111+41427345..41431903Lipase family protein, expressed
LOC_Os01g71020OsAffx.11810.1.S1_x_at11/111+41433477..41433785hypothetical protein
LOC_Os01g71030OsAffx.11811.1.S1_at9/111+41436399..41438452hypothetical protein
LOC_Os01g71040Os.18275.1.S1_at11/111+41438853..41441707expressed protein
LOC_Os01g71040Os.18275.1.S2_at11/111+41438853..41441707expressed protein
LOC_Os01g71050Os.28078.1.S1_at11/111+41444065..41449088MSP domain containing protein, expressed
LOC_Os01g71060OsAffx.21834.1.S1_x_at11/111+41453387..41454526xylanase inhibitor TAXI-IV, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006629biological_processlipid metabolism
GO:0004806molecular_functiontriacylglycerol lipase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10088.1.S1_a_at--348--5571Chr01:41428307..41428331 (25 bp)
GAAATACTTGCCTCACGCAATCCGA
LOC_Os01g71010
Os.10088.1.S1_a_at--277--5191Chr01:41428291..41428315 (25 bp)
GCAATCCGAGTTACCCATGGTCATG
LOC_Os01g71010
Os.10088.1.S1_a_at--363--331Chr01:41428244..41428268 (25 bp)
ATACTTCTCATTCTTCCCACAGAAG
LOC_Os01g71010
Os.10088.1.S1_a_at--631--10531Chr01:41427932..41427956 (25 bp)
TTCATAACGTCGGACTAGGAAGCCT
LOC_Os01g71010
Os.10088.1.S1_a_at--233--7651Chr01:41427687..41427711 (25 bp)
GGGAGCAGCGTGCAAGACCACATAT
LOC_Os01g71010
Os.10088.1.S1_a_at--920--5851Chr01:41427672..41427696 (25 bp)
GACCACATATACTATCTCGGCGTCA
LOC_Os01g71010
Os.10088.1.S1_a_at--963--8071Chr01:41427629..41427653 (25 bp)
GGAGCTCCTGCAGGATCGTCATGGA
LOC_Os01g71010
Os.10088.1.S1_a_at--494--511Chr01:41427615..41427639 (25 bp)
ATCGTCATGGACTACAGCAAGCTGC
LOC_Os01g71010
Os.10088.1.S1_a_at--83--5171Chr01:41427599..41427623 (25 bp)
GCAAGCTGCGTTACCGGATGGACAT
LOC_Os01g71010
Os.10088.1.S1_a_at--104--2971Chr01:41427573..41427597 (25 bp)
AATGGCAACATCGTCTTGTCAAAGC
LOC_Os01g71010
Os.10088.1.S1_a_at--167--3551Chr01:41427549..41427573 (25 bp)
CATCTGGGTTTGTCAGGTGACCTAG
LOC_Os01g71010
Target Sequence 
GAAATACTTGCCTCACGCAATCCGAGTTACCCATGGTCATGATATCGTGCCTCACCTGCCACCATACTTCTCATTCTTCC
CACAGAAGACNTACCATCANNTCCCAAGAGAGNTATGGNTTCATAACGTCGGACTAGGAAGCCTNGTGTACTCNGTAGAG
CAGATCTGTGATGATTCTGGTGAAGACCCATCNTGCTNCAGGTCTGTGAGTGGGAGCAGCGTGCAAGACCACATATACTA
TCTCGGCGTCAGCATGCACGCCGAGGCATGGAGCTCCTGCAGGATCGTCATGGACTACAGCAAGCTGCGTTACCGGATGG
ACATCAATGGCAACATCGTCTTGTCAAAGCATCTGGGTTTGTCAGGTGACCTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10088.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis