Browse Element(s) Details


Os.10276.1.S1_at

Description gb:AF012896.1
DB_XREF= gi:2293565
GEN=Os-ARF1
TID=Os.10276.1
CNT=35
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10276 (NCBI UniGene Cluster)
DEF=Oryza sativa ADP-ribosylation factor 1 (Os-ARF1) mRNA, complete cds.
PROD=ADP-ribosylation factor 1
FL= gb:AF012896.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1220011/11ADP-ribosylation factor 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g12150Os.14385.1.S1_at11/117+6797286..6798153Acyl carrier protein, mitochondrial precursor, putative, expressed
LOC_Os07g12160Os.40210.1.S1_at10/117+6801713..68048772-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase family protein, expressed
LOC_Os07g12170Os.10276.2.S1_at10/117+6807581..6810987ADP-ribosylation factor 1, putative, expressed
LOC_Os07g12170Os.12389.1.S1_x_at1/117+6807581..6810987ADP-ribosylation factor 1, putative, expressed
LOC_Os07g12180OsAffx.22708.5.S1_x_at7/117+6813623..6816373retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g12180OsAffx.22708.1.S1_x_at6/117+6813623..6816373retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g12180OsAffx.22708.2.S1_x_at6/117+6813623..6816373retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g12180OsAffx.22708.5.S1_at3/117+6813623..6816373retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g12190OsAffx.22708.3.S1_x_at9/117+6817502..6818596retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g12190OsAffx.22708.4.S1_x_at8/117+6817502..6818596retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g12200Os.10276.1.S1_at11/117+6821013..6823997ADP-ribosylation factor 1, putative, expressed
LOC_Os07g12210OsAffx.22440.1.S1_at11/117+6832221..6833291hypothetical protein
LOC_Os07g12220OsAffx.22439.1.S1_at11/117+6839803..6843124expressed protein
LOC_Os07g12230OsAffx.22438.1.S1_x_at11/117+6846320..6851694hypothetical protein
LOC_Os07g12230OsAffx.22438.1.S1_at11/117+6846320..6851694hypothetical protein
LOC_Os07g12230OsAffx.8676.1.S1_at4/117+6846320..6851694hypothetical protein
LOC_Os07g12230Os.10031.1.S1_at1/117+6846320..6851694hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006499biological_processN-terminal protein myristoylation
GO:0005798cellular_componentGolgi-associated vesicle
GO:0005525molecular_functionGTP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10276.1.S1_at--663--2671Chr07:6823275..6823299 (25 bp)
AAGCTTGGATTACATTCCCTTCGTC
LOC_Os07g12200
Os.10276.1.S1_at--822--91Chr07:6823288..6823312 (25 bp)
ATTCCCTTCGTCAGCGTCACTGGTA
LOC_Os07g12200
Os.10276.1.S1_at--756--4391Chr07:6823544..6823568 (25 bp)
GCCACAACTGGCGAGGGTTTGTATG
LOC_Os07g12200
Os.10276.1.S1_at--61--4931Chr07:6823740..6823764 (25 bp)
GCTTGATGCTTGATACGTGGACCTT
LOC_Os07g12200
Os.10276.1.S1_at--277--8071Chr07:6823758..6823782 (25 bp)
GGACCTTTAAGACATGGAGCTGACT
LOC_Os07g12200
Os.10276.1.S1_at--613--4111Chr07:6823818..6823842 (25 bp)
CGAAGCACTGTTTCAATCTGTTTTT
LOC_Os07g12200
Os.10276.1.S1_at--1057--471Chr07:6823833..6823857 (25 bp)
ATCTGTTTTTGTAAGGCATGTGGCT
LOC_Os07g12200
Os.10276.1.S1_at--640--911Chr07:6823846..6823870 (25 bp)
AGGCATGTGGCTTCGGCGAGTCCAA
LOC_Os07g12200
Os.10276.1.S1_at--313--6491Chr07:6823883..6823907 (25 bp)
GATACCTCACTTGAATGTTCCGTAC
LOC_Os07g12200
Os.10276.1.S1_at--364--5271Chr07:6823895..6823919 (25 bp)
GAATGTTCCGTACTTTTGGATATTA
LOC_Os07g12200
Os.10276.1.S1_at--634--1531Chr07:6823952..6823976 (25 bp)
AGCATGATGGATGTTTCCGCGACAT
LOC_Os07g12200
Target Sequence 
AAGCTTGGATTACATTCCCTTCGTCAGCGTCACTGGTACATCCAGAGCACTTGTGCCACAACTGGCGAGGGTTTGTATGA
GGGCCTGGATTGGCTGTCCAGCAACATTGCTAGCAAGGCTTGATGCTTGATACGTGGACCTTTAAGACATGGAGCTGACT
AGGAGCTATGGCATGTATCTCATTCATATGTAGGACGAAGCACTGTTTCAATCTGTTTTTGTAAGGCATGTGGCTTCGGC
GAGTCCAATATTTTTGTAATGATACCTCACTTGAATGTTCCGTACTTTTGGATATTATTTGTACCTGTTCATTTTGCACA
AGGATTTACAGCATGATGGATGTTTCCGCGACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10276.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis