Browse Element(s) Details


Os.10346.1.S1_at

Description gb:AK073238.1
DB_XREF= gi:32983261
TID=Os.10346.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10346 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative cytochrome P450 (P0456A01.12), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033015M03, full insert sequence.
FL= gb:AK073238.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5279011/11Cytochrome P450 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g52750Os.20579.1.S1_at11/111+30670927..30675782Subtilisin N-terminal Region family protein, expressed
LOC_Os01g52760OsAffx.2319.1.S1_at11/111+30678677..30685105expressed protein
LOC_Os01g52760Os.33039.1.S1_at10/111+30678677..30685105expressed protein
LOC_Os01g52760Os.54724.1.S1_at3/111+30678677..30685105expressed protein
LOC_Os01g52770Os.28229.2.S1_x_at11/111+30688608..30690943GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g52770Os.28229.1.S1_at5/111+30688608..30690943GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g52770Os.51561.1.S1_x_at1/111+30688608..30690943GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g52780Os.41805.1.S1_at11/111+30689910..30697060TB2/DP1, HVA22 family protein, expressed
LOC_Os01g52780Os.37148.1.S1_at11/111+30689910..30697060TB2/DP1, HVA22 family protein, expressed
LOC_Os01g52790Os.10346.1.S1_at11/111+30699052..30703760Cytochrome P450 family protein, expressed
LOC_Os01g52800NANA1+30705033..30705832Cytochrome P450 72A1, putative
LOC_Os01g52810Os.38212.1.S1_at6/111+30707676..30710005expressed protein
LOC_Os01g52810Os.52501.1.S1_x_at5/111+30707676..30710005expressed protein
LOC_Os01g52820OsAffx.21521.1.S1_at10/111+30712833..30713207hypothetical protein
LOC_Os01g52830Os.941.1.S1_at11/111+30713755..30714721secreted protein, putative, expressed
LOC_Os01g52840Os.34131.1.S1_s_at10/111+30716516..30718652hAT family dimerisation domain containing protein
LOC_Os01g52850NANA1+30719608..30720030hypothetical protein
LOC_Os01g52864Os.942.1.S1_at11/111+30725792..30732331integral membrane family protein, putative, expressed
LOC_Os01g52864OsAffx.2320.1.S1_at7/111+30725792..30732331integral membrane family protein, putative, expressed
LOC_Os01g52864Os.53962.1.S1_at1/111+30725792..30732331integral membrane family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10346.1.S1_at--865--7311Chr01:30699522..30699546 (25 bp)
GTGCTAACTCTCCAACCACAGTACG
LOC_Os01g52790
Os.10346.1.S1_at--402--4371Chr01:30699507..30699531 (25 bp)
CCACAGTACGGTTCTCCAATTAAAT
LOC_Os01g52790
Os.10346.1.S1_at--652--8991Chr01:30699482..30699506 (25 bp)
TGAAGAAGCTCTAGTGATCTCGGTC
LOC_Os01g52790
Os.10346.1.S1_at--1108--7391Chr01:30699469..30699493 (25 bp)
GTGATCTCGGTCGAGGAGAACATAA
LOC_Os01g52790
Os.10346.1.S1_at--961--6991Chr01:30699435..30699459 (25 bp)
GTACATGCTGAAATCTAAATCTATA
LOC_Os01g52790
Os.10346.1.S1_at--80--5971Chr01:30699336..30699360 (25 bp)
GAGAACTACAAATTTAGGGCCAAGT
LOC_Os01g52790
Os.10346.1.S1_at--549--451Chr01:30699254..30699278 (25 bp)
ATCTCTGCCACTAATGTTACGTTAG
LOC_Os01g52790
Os.10346.1.S1_at--550--2831Chr01:30699214..30699238 (25 bp)
AAGTTTTGTACTTAACATGGTGCCA
LOC_Os01g52790
Os.10346.1.S1_at--351--3511Chr01:30699199..30699223 (25 bp)
CATGGTGCCAACAATGTAGTTTTGT
LOC_Os01g52790
Os.10346.1.S1_at--475--6072Chr04:13218688..13218806 (25 bp)
GAGTTTTTTGTGTCTAACTTTGATC
NONE
Os.10346.1.S1_at--761--9511Chr01:30699108..30699132 (25 bp)
TCTAACTTTGATCGCCCGTATTTTT
LOC_Os01g52790
Target Sequence 
GTGCTAACTCTCCAACCACAGTACGGTTCTCCAATTAAATTGAAGAAGCTCTAGTGATCTCGGTCGAGGAGAACATAAAG
CTACCCNGTACATGCTGAAATCTAAATCTATATGAATAAATTTCATAAAACTACATGTATTTTAATCAAATTATCACAAA
CTANAGATTTAACANAATATTTATTAGAGAACTACAAATTTAGGGCCAAGTACAAAACTATAGATTTAATACTAGAGTTA
TCACAAAACTACAGGTTTTATAGNTTAAATCTCTGCCACTAATGTTACGTTAGAGTTATAAATGTTGCAAGTTTTGTACT
TAACATGGTGCCAACAATGTAGTTTTGTGATAATTTTATTACTAAATATGTACTCCCTCCATCNTNAAATAAGCGCANCC
ATGAGTTTTTTGTGTCTAACTTTGATCGCCCGTATTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10346.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis