Browse Element(s) Details


Os.10391.1.S1_a_at

Description gb:AK067992.1
DB_XREF= gi:32978010
TID=Os.10391.1
CNT=19
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10391 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033048M19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013122B14, full insert sequence.
FL= gb:AK067992.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g5163011/11early-responsive to dehydration protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g51580OsAffx.27406.1.S1_at11/115+29500557..29501019hypothetical protein
LOC_Os05g51590Os.10294.1.S1_at11/115+29501485..29502876B2 protein, putative, expressed
LOC_Os05g51610Os.27828.1.S1_a_at11/115+29505383..29510567Vacuolar cation/proton exchanger 1b, putative, expressed
LOC_Os05g51620Os.19034.1.S1_at11/115+29512303..29518084expressed protein
LOC_Os05g51620Os.50278.2.S1_at1/115+29512303..29518084expressed protein
LOC_Os05g51630Os.10391.1.S1_a_at11/115+29524916..29533060early-responsive to dehydration protein, putative, expressed
LOC_Os05g51630Os.2259.1.S1_s_at1/115+29524916..29533060early-responsive to dehydration protein, putative, expressed
LOC_Os05g51640Os.4803.1.S1_at11/115+29534432..29539656adhesion regulating molecule family, putative, expressed
LOC_Os05g51650Os.7005.1.S1_s_at11/115+29539790..29541836U6 snRNA-associated Sm-like protein LSm8, putative, expressed
LOC_Os05g51650OsAffx.27407.1.S1_at10/115+29539790..29541836U6 snRNA-associated Sm-like protein LSm8, putative, expressed
LOC_Os05g51660OsAffx.15200.4.A1_at11/115+29541501..29542508SCP-like extracellular protein, expressed
LOC_Os05g51660Os.53200.1.S1_s_at11/115+29541501..29542508SCP-like extracellular protein, expressed
LOC_Os05g51670Os.10131.1.S1_a_at11/115+29548701..29552580UDP-glucose 4-epimerase GEPI48, putative, expressed
LOC_Os05g51680Os.10131.4.A1_at11/115+29551649..29554990SCP-like extracellular protein, expressed
LOC_Os05g51680Os.10131.3.A1_at11/115+29551649..29554990SCP-like extracellular protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10391.1.S1_a_at--33--1671Chr05:29532381..29532405 (25 bp)
AGCCTGCATTTGTGAGGAACCCACT
LOC_Os05g51630
Os.10391.1.S1_a_at--120--8171Chr05:29532396..29532500 (25 bp)
GGAACCCACTACAGGAAGCGATGAG
LOC_Os05g51630
Os.10391.1.S1_a_at--32--5871Chr05:29532526..29532550 (25 bp)
GAGCCAACCTTCGATCTGAAAGCGT
LOC_Os05g51630
Os.10391.1.S1_a_at--772--7391Chr05:29532640..29532664 (25 bp)
GTGATCGTGCCGACCAAGCGTCAAT
LOC_Os05g51630
Os.10391.1.S1_a_at--782--2831Chr05:29532691..29532715 (25 bp)
AAGTACGAAGGCTCCGACACGCTCT
LOC_Os05g51630
Os.10391.1.S1_a_at--745--5691Chr05:29532765..29532789 (25 bp)
GACTACTAGCTTGTTGAATTCTTTA
LOC_Os05g51630
Os.10391.1.S1_a_at--419--1251Chr05:29532804..29532828 (25 bp)
AGATTGATACATACCTACTCCTACG
LOC_Os05g51630
Os.10391.1.S1_a_at--356--8271Chr05:29532837..29532861 (25 bp)
GGCAGATAGCTTTGCTGTACACTTT
LOC_Os05g51630
Os.10391.1.S1_a_at--534--7031Chr05:29532853..29532877 (25 bp)
GTACACTTTACAGCACGAGAGGTAT
LOC_Os05g51630
Os.10391.1.S1_a_at--18--7931Chr05:29532884..29532908 (25 bp)
GGATTGTTCAACACCCACAGACTGA
LOC_Os05g51630
Os.10391.1.S1_a_at--568--3311Chr05:29532899..29532923 (25 bp)
CACAGACTGATGATTGGATTGCCAA
LOC_Os05g51630
Target Sequence 
AGCCTGCATTTGTGAGGAACCCACTACAGGAAGCGATGAGGAAAGACACCCTGGAACGGGCAAGGGAGCCAACCTTCGAT
CTGAAAGCGTACCTGGCCAATGCGTACCTGCACCCGGTGTTCAAAGGCAGGGAGGAGGAGGACAATATGTCAATATCCGA
GGATGTCGGGATGGAGGAGGTGATCGTGCCGACCAAGCGTCAATCTCGCCGGAACACTCCCGCCCAGAGCAAGTACGAAG
GCTCCGACACGCTCTCTCTTCCTGAAACTGTACACGAACGATAGAGCTACGGGAATATCAGGGTGACTACTAGCTTGTTG
AATTCTTTATAGTCTGTACAGATAGATTGATACATACCTACTCCTACGGGGATGTTGGCAGATAGCTTTGCTGTACACTT
TACAGCACGAGAGGTATATGGAGGGATTGTTCAACACCCACAGACTGATGATTGGATTGCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10391.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis