Browse Element(s) Details


Os.10435.1.S1_at

Description gb:AK061197.1
DB_XREF= gi:32971215
TID=Os.10435.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.10435 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-209-H06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-209-H06, full insert sequence.
FL= gb:AK061197.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6206010/11amidohydrolase family protein, expressed
LOC_Os03g620701/11IAA-amino acid hydrolase 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g61990Os.12192.1.S1_a_at11/113+35073046..35076279RNA recognition motif family protein, expressed
LOC_Os03g61990Os.12192.1.S2_a_at11/113+35073046..35076279RNA recognition motif family protein, expressed
LOC_Os03g62000OsAffx.13575.1.S1_at11/113+35076809..35077806hypothetical protein
LOC_Os03g62010Os.8517.1.S1_at11/113+35079129..35080131Harpin-induced protein 1 containing protein, expressed
LOC_Os03g62020OsAffx.25793.1.S1_at11/113+35084760..35085389Harpin-induced protein 1 containing protein
LOC_Os03g62030Os.9694.1.S1_at11/113+35086193..35088735expressed protein
LOC_Os03g62040OsAffx.13576.1.S1_s_at11/113+35089271..35092081retrotransposon protein, putative, unclassified, expressed
LOC_Os03g62040Os.49881.1.S1_at11/113+35089271..35092081retrotransposon protein, putative, unclassified, expressed
LOC_Os03g62040Os.54519.1.S1_at1/113+35089271..35092081retrotransposon protein, putative, unclassified, expressed
LOC_Os03g62050OsAffx.13577.1.S1_at11/113+35095123..35096236hypothetical protein
LOC_Os03g62060Os.10435.1.S1_at10/113+35099322..35102118amidohydrolase family protein, expressed
LOC_Os03g62060Os.54455.1.S1_at1/113+35099322..35102118amidohydrolase family protein, expressed
LOC_Os03g62070Os.19742.1.S1_at1/113+35103640..35107408IAA-amino acid hydrolase 1, putative, expressed
LOC_Os03g62070Os.10435.1.S1_at1/113+35103640..35107408IAA-amino acid hydrolase 1, putative, expressed
LOC_Os03g62080Os.52608.1.S1_at11/113+35107535..35113012mRNA decapping enzyme, putative, expressed
LOC_Os03g62080OsAffx.22644.1.S1_at1/113+35107535..35113012mRNA decapping enzyme, putative, expressed
LOC_Os03g62090Os.4857.1.S1_at10/113+35116690..35122248Cellulose synthase A catalytic subunit 6, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0009850biological_processauxin metabolism
GO:0008237molecular_functionmetallopeptidase activity
GO:0010178molecular_functionIAA-amino acid conjugate hydrolase activity
GO:0010179molecular_functionIAA-Ala conjugate hydrolase activity
GO:0010210molecular_functionIAA-Phe conjugate hydrolase activity
GO:0010211molecular_functionIAA-Leu conjugate hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10435.1.S1_at--698--10532Chr03:35101570..35101594 (25 bp)
TTCATGGAGGATAAGCTCCCGCCAT
LOC_Os03g62060
Os.10435.1.S1_at--604--3571Chr03:35101592..35101616 (25 bp)
CATACCCAGCGACGGTGAACGACGA
LOC_Os03g62060
Os.10435.1.S1_at--944--6151Chr03:35101702..35101726 (25 bp)
GAGGATTTCGGGTTCTACGCGCAGA
LOC_Os03g62060
Os.10435.1.S1_at--554--5791Chr03:35101791..35101815 (25 bp)
GACGAAGAATCAGCTGCACTCGCCG
LOC_Os03g62060
Os.10435.1.S1_at--1102--2451Chr03:35101888..35101912 (25 bp)
AACAAGAACGCCTCTGGCCCTTCAG
LOC_Os03g62060
Os.10435.1.S1_at--28--6331Chr03:35101916..35101940 (25 bp)
GATGCGTCCCGTCAAGGAGCTTAAA
LOC_Os03g62060
Os.10435.1.S1_at--754--972Chr03:35107421..35107445 (25 bp)
AGGAGCTTAAATCGCCTATGCATGG
NONE
Os.10435.1.S1_at--979--351Chr03:35101996..35102020 (25 bp)
ATAATGGTCCTACTAGCTACTAGCT
LOC_Os03g62060
Os.10435.1.S1_at--864--9971Chr03:35102016..35102040 (25 bp)
TAGCTGCCCAAGAACAGGCCGTTAC
LOC_Os03g62060
Os.10435.1.S1_at--97--3471Chr03:35102079..35102103 (25 bp)
CAGTGATAATAAATTCCCGGATTGT
LOC_Os03g62060
Os.10435.1.S1_at--842--871Chr03:35102124..35102148 (25 bp)
ATGGCCTCATGGGTACGACGAGCGA
NONE
Target Sequence 
TTCATGGAGGATAAGCTCCCGCCATACCCAGCGACGGTGAACGACGAGGAGATGTACGCGCACGCCAAGGCGGTGGCGGA
GAGCATGCTCGGGGAGGCCAACGTGAAGCTGTCCCCACAGGGCATGGGGGCGGAGGATTTCGGGTTCTACGCGCAGAGGA
TCCCGGCCGCCTTCTTCGGCATAGGGGTCGGCAACGATGGCGGCGGGATGGCGGAGACGACGACGAAGAATCAGCTGCAC
TCGCCGCACTTTGTCGTCGACGAGGAAGCGCTCCCCGTCGGAGCCGCCTTCCACGCCGCCGTCGCCATCGAGTACCTCAA
CAAGAACGCCTCTGGCCCTTCAGCCTGATGCGTCCCGTCAAGGAGCTTAAATCGCCTATGCATGGCTTGGTAATGGGGTT
ATCTAAGACTATAATAATATCCAAAAATAATGGTCCTACTAGCTACTAGCTGCCCAAGAACAGGCCGTTACAAAAACGTG
TAAAAACTATTCCAGTTGGTCAGCACAAGCAGTGATAATAAATTCCCGGATTGTTTTCTTTTATTCGTNCTGCCATGGCC
TCATGGGTACGACGAGCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10435.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis