Browse Element(s) Details


Os.10539.1.S1_at

Description gb:AK111347.1
DB_XREF= gi:32996556
TID=Os.10539.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10539 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-181-G03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-181-G03, full insert sequence.
FL= gb:AK111347.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3535011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g35300OsAffx.31235.1.S1_at11/1111+20194742..20200375hypothetical protein
LOC_Os11g35300OsAffx.31235.2.S1_at5/1111+20194742..20200375hypothetical protein
LOC_Os11g35310Os.51241.1.S1_at3/1111+20201419..20201869Phytosulfokine precursor protein containing protein
LOC_Os11g35320Os.54971.1.S1_at11/1111+20208259..20212913BSD domain containing protein, expressed
LOC_Os11g35320Os.27573.1.S1_at11/1111+20208259..20212913BSD domain containing protein, expressed
LOC_Os11g35320OsAffx.7300.1.S1_x_at11/1111+20208259..20212913BSD domain containing protein, expressed
LOC_Os11g35320OsAffx.7300.1.S1_at11/1111+20208259..20212913BSD domain containing protein, expressed
LOC_Os11g35320OsAffx.24114.2.S1_at1/1111+20208259..20212913BSD domain containing protein, expressed
LOC_Os11g35320OsAffx.24114.2.S1_x_at1/1111+20208259..20212913BSD domain containing protein, expressed
LOC_Os11g35330OsAffx.31308.1.S1_at11/1111+20215165..20217219Protein kinase domain containing protein, expressed
LOC_Os11g35340Os.53271.1.S1_at11/1111+20219433..20222337protease, putative, expressed
LOC_Os11g35350Os.10539.1.S1_at11/1111+20222676..20223328expressed protein
LOC_Os11g35360Os.6067.1.S1_at11/1111+20228241..20230243Actin polymerization factor, putative, expressed
LOC_Os11g35370OsAffx.31273.1.S1_at11/1111+20230693..20231388hypothetical protein
LOC_Os11g35370OsAffx.31273.2.S1_at10/1111+20230693..20231388hypothetical protein
LOC_Os11g35370OsAffx.31273.1.S1_x_at10/1111+20230693..20231388hypothetical protein
LOC_Os11g35380OsAffx.31309.1.S1_at11/1111+20232504..20233061hypothetical protein
LOC_Os11g35390Os.57062.1.S1_at11/1111+20233821..20236387Myb-like DNA-binding domain containing protein, expressed
LOC_Os11g35400Os.56290.1.S1_at11/1111+20242430..20247067AMP-binding enzyme family protein, expressed
LOC_Os11g35410OsAffx.7301.1.S1_at11/1111+20247547..20250627Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10539.1.S1_at--16--5731Chr11:20223098..20223122 (25 bp)
GACTGCATCCCTAACTACAATGTTT
LOC_Os11g35350
Os.10539.1.S1_at--647--6691Chr11:20223051..20223075 (25 bp)
GTTCGAACGGACCAATTGCTGCGAC
LOC_Os11g35350
Os.10539.1.S1_at--103--8151Chr11:20223024..20223048 (25 bp)
GGACAACTACGTGTGCCAGTACTGG
LOC_Os11g35350
Os.10539.1.S1_at--159--8471Chr11:20223002..20223026 (25 bp)
TGGCCGGAAATGGATCCAGCACATG
LOC_Os11g35350
Os.10539.1.S1_at--1115--2111Chr11:20222982..20223006 (25 bp)
ACATGGCCAGGACTGGTGCATTCCT
LOC_Os11g35350
Os.10539.1.S1_at--1151--7311Chr11:20222967..20222991 (25 bp)
GTGCATTCCTCGCAATTACTGGAGT
LOC_Os11g35350
Os.10539.1.S1_at--103--891Chr11:20222867..20222891 (25 bp)
AGGCCATGGAAAACGGTCCGTTCTG
LOC_Os11g35350
Os.10539.1.S1_at--907--6651Chr11:20222848..20222872 (25 bp)
GTTCTGTTAACGTGATCGCCCGAAT
LOC_Os11g35350
Os.10539.1.S1_at--321--531Chr11:20222834..20222858 (25 bp)
ATCGCCCGAATCAAAACTCCATTTT
LOC_Os11g35350
Os.10539.1.S1_at--259--10351Chr11:20222811..20222835 (25 bp)
TTTAGCTAATAATTGGCCGTATCCC
LOC_Os11g35350
Os.10539.1.S1_at--247--4511Chr11:20222796..20222820 (25 bp)
GCCGTATCCCATTTAATCGTCTGAA
LOC_Os11g35350
Target Sequence 
GACTGCATCCCTAACTACAATGTTTGCTGCAGCAACTGCGGCTGGCCGTTCGAACGGACCAATTGCTGCGACCCGGACAA
CTACGTGTGCCAGTACTGGCCGGAAATGGATCCAGCACATGGCCAGGACTGGTGCATTCCTCGCAATTACTGGAGTACTT
CCTCCNCATAATGTTTGTTCAGTTTTATATCTTCACAATTTGATTTTTTTTNGAAGAGAGAGTAAGCCTTAAGGCCATGG
AAAACGGTCCGTTCTGTTAACGTGATCGCCCGAATCAAAACTCCATTTTTAGCTAATAATTGGCCGTATCCCATTTAATC
GTCTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10539.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis