Browse Element(s) Details


Os.10968.1.S1_at

Description gb:AK060471.1
DB_XREF= gi:32970489
TID=Os.10968.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.10968 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-012-E06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-012-E06, full insert sequence.
FL= gb:AK060471.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5655011/11Transcription initiation factor IIF, beta subunit family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g56500OsAffx.23809.3.S1_at11/111+32900735..32902741expressed protein
LOC_Os01g56500OsAffx.23809.1.S1_x_at11/111+32900735..32902741expressed protein
LOC_Os01g56500OsAffx.23809.2.S1_x_at2/111+32900735..32902741expressed protein
LOC_Os01g56510Os.35685.1.S1_at11/111+32907558..32912991Glycosyl hydrolase family 3 N terminal domain containing protein, expressed
LOC_Os01g56520Os.18007.1.S1_s_at11/111+32913773..32918799Double-stranded RNA binding motif family protein, expressed
LOC_Os01g56520Os.18007.1.S1_at11/111+32913773..32918799Double-stranded RNA binding motif family protein, expressed
LOC_Os01g56530OsAffx.11623.1.S1_s_at11/111+32919844..32920762expressed protein
LOC_Os01g56530OsAffx.11623.1.S1_at9/111+32919844..32920762expressed protein
LOC_Os01g56540OsAffx.11623.1.S1_at2/111+32921208..32924113Pre-SET motif family protein, expressed
LOC_Os01g56540Os.54138.1.S1_at1/111+32921208..32924113Pre-SET motif family protein, expressed
LOC_Os01g56550Os.10968.1.S1_at11/111+32924932..32928652Transcription initiation factor IIF, beta subunit family protein, expressed
LOC_Os01g56550Os.32625.1.S1_s_at11/111+32924932..32928652Transcription initiation factor IIF, beta subunit family protein, expressed
LOC_Os01g56550Os.32625.2.S1_x_at10/111+32924932..32928652Transcription initiation factor IIF, beta subunit family protein, expressed
LOC_Os01g56560Os.45897.1.S1_at11/111+32935529..32937893aromatic-rich family protein, putative, expressed
LOC_Os01g56560Os.45897.1.S1_s_at11/111+32935529..32937893aromatic-rich family protein, putative, expressed
LOC_Os01g56560OsAffx.23810.1.S1_at10/111+32935529..32937893aromatic-rich family protein, putative, expressed
LOC_Os01g56570Os.29865.1.S1_at10/111+32938264..32939986Core-2/I-Branching enzyme family protein, expressed
LOC_Os01g56580Os.11591.1.S1_x_at11/111+32942542..32949739protein kinase family protein, putative, expressed
LOC_Os01g56580Os.11591.2.S1_at10/111+32942542..32949739protein kinase family protein, putative, expressed
LOC_Os01g56580Os.52563.1.S1_at1/111+32942542..32949739protein kinase family protein, putative, expressed
LOC_Os01g56590Os.23676.1.S1_at11/111+32951018..32973887HEAT repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006367biological_processtranscription initiation from RNA polymerase II promoter
GO:0005674cellular_componenttranscription factor TFIIF complex
GO:0005739cellular_componentmitochondrion
GO:0003702molecular_functionRNA polymerase II transcription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10968.1.S1_at--182--9951Chr01:32925108..32925132 (25 bp)
TACGCATCAAGCGATACATCTTTTG
LOC_Os01g56550
Os.10968.1.S1_at--1159--4111Chr01:32925106..32925130 (25 bp)
CGCATCAAGCGATACATCTTTTGGT
LOC_Os01g56550
Os.10968.1.S1_at--867--6771Chr01:32925081..32925105 (25 bp)
GTTACTGGCGGCCATATCTTAGACC
LOC_Os01g56550
Os.10968.1.S1_at--926--9911Chr01:32925079..32925103 (25 bp)
TACTGGCGGCCATATCTTAGACCCA
LOC_Os01g56550
Os.10968.1.S1_at--242--8491Chr01:32925076..32925100 (25 bp)
TGGCGGCCATATCTTAGACCCAGAT
LOC_Os01g56550
Os.10968.1.S1_at--605--4711Chr01:32925074..32925098 (25 bp)
GCGGCCATATCTTAGACCCAGATTT
LOC_Os01g56550
Os.10968.1.S1_at--524--8431Chr01:32925072..32925096 (25 bp)
GGCCATATCTTAGACCCAGATTTCG
LOC_Os01g56550
Os.10968.1.S1_at--850--4291Chr01:32925070..32925094 (25 bp)
CCATATCTTAGACCCAGATTTCGGG
LOC_Os01g56550
Os.10968.1.S1_at--142--7471Chr01:32925031..32925055 (25 bp)
GTGTCCATCAGAGTTTAGAAACAAG
LOC_Os01g56550
Os.10968.1.S1_at--593--7471Chr01:32924993..32925017 (25 bp)
GTGTGTATAATGTATTTTAGCTCTT
LOC_Os01g56550
Os.10968.1.S1_at--551--2391Chr01:32924933..32924957 (25 bp)
AAACACCTTGACCTACTCTTCCCTG
LOC_Os01g56550
Target Sequence 
TACGCATCAAGCGATACATCTTTTGGTGTTACTGGCGGCCATATCTTAGACCCAGATTTCGGGGACTCGATATATTCGTG
TCCATCAGAGTTTAGAAACAAGGATGTTGAAATTTGTGTGTATAATGTATTTTAGCTCTTCTAGGCAAACTAACATGATG
ATTTTCATGATCATTAAACACCTTGACCTACTCTTCCCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10968.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis