Browse Element(s) Details


Os.11175.1.S1_at

Description gb:AK099052.1
DB_XREF= gi:32984261
TID=Os.11175.1
CNT=17
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11175 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-031-F02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013145A19, full insert sequence.
FL= gb:AK104093.1 gb:AK073468.1 gb:AK099052.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4915011/11Eukaryotic translation initiation factor 3 subunit 7, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g49120Os.47391.1.S1_at11/115+28093305..28099197NLI interacting factor-like phosphatase family protein, expressed
LOC_Os05g49130Os.53738.1.S1_at11/115+28099855..2810542116S rRNA processing protein RimM family, putative, expressed
LOC_Os05g49140Os.11617.1.S1_at11/115+28105490..28110750Protein kinase domain containing protein, expressed
LOC_Os05g49150Os.11175.1.S1_at11/115+28118856..28120955Eukaryotic translation initiation factor 3 subunit 7, putative, expressed
LOC_Os05g49160Os.10680.1.S1_at10/115+28122194..28125363negatively light-regulated protein, putative, expressed
LOC_Os05g49164Os.15891.1.A1_s_at11/115+28127135..28129253expressed protein
LOC_Os05g49164Os.38268.2.S1_s_at11/115+28127135..28129253expressed protein
LOC_Os05g49164Os.56140.1.S1_x_at7/115+28127135..28129253expressed protein
LOC_Os05g49164Os.38268.3.S1_x_at3/115+28127135..28129253expressed protein
LOC_Os05g49170Os.13917.1.S1_at10/115+28130538..28132773cold acclimation protein COR413-TM1, putative, expressed
LOC_Os05g49180Os.8463.1.S3_at11/115+28136875..28145528expressed protein
LOC_Os05g49180Os.8463.1.S2_at11/115+28136875..28145528expressed protein
LOC_Os05g49180Os.8463.1.S1_at11/115+28136875..28145528expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006413biological_processtranslational initiation
GO:0003743molecular_functiontranslation initiation factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11175.1.S1_at--169--7671Chr05:28119401..28119425 (25 bp)
GGGATTTTGCTACACAGATCAACCT
LOC_Os05g49150
Os.11175.1.S1_at--493--2851Chr05:28119348..28119372 (25 bp)
AAGTCGATCGTGGACATCTGCATGA
LOC_Os05g49150
Os.11175.1.S1_at--708--8871Chr05:28119181..28119205 (25 bp)
TGATGTTGATGCTACCGCGGAGGAA
LOC_Os05g49150
Os.11175.1.S1_at--611--2691Chr05:28119083..28119107 (25 bp)
AAGCTGCTGCCGCTTGAAGGGCTCC
LOC_Os05g49150
Os.11175.1.S1_at--863--5311Chr05:28119068..28119092 (25 bp)
GAAGGGCTCCTCTTCAGGTTGCCAG
LOC_Os05g49150
Os.11175.1.S1_at--764--9631Chr05:28119055..28119079 (25 bp)
TCAGGTTGCCAGCTAGATCCTTTTT
LOC_Os05g49150
Os.11175.1.S1_at--1065--6051Chr05:28118996..28119020 (25 bp)
GAGTTGAACTGCCTGTTATCGATAC
LOC_Os05g49150
Os.11175.1.S1_at--108--3471Chr05:28118972..28118996 (25 bp)
CAGTGGTCTTGTTTGGTCGATGATA
LOC_Os05g49150
Os.11175.1.S1_at--943--5691Chr05:28118900..28118924 (25 bp)
GACTATGTTGGTACTCCTAGTTTGA
LOC_Os05g49150
Os.11175.1.S1_at--734--6851Chr05:28118881..28118905 (25 bp)
GTTTGATATCACTTCTGGCTGTTTA
LOC_Os05g49150
Os.11175.1.S1_at--45--8351Chr05:28118865..28118889 (25 bp)
GGCTGTTTATTGACCATGTTACTAT
LOC_Os05g49150
Target Sequence 
GGGATTTTGCTACACAGATCAACCTCAACACATCAAACATGTGGGGAATTGTCAAGTCGATCGTGGACATCTGCATGAAG
TTTGAGGAGGGAAAGTATGTGCTTGTAAAAGATCCNGCGAAGCCACAAGTGAGGATCTATGAGGTGCCTTCTGATGCATT
TGAGAATGACTATGTGGAAGAGCCACTTCCGGAGGAGGAACAGGTTCGGCCGCCATCAGATGATGTTGATGCTACCGCGG
AGGAAATGGATGCAGCGGCAGAGGCTGAGGCGAACAATGCAGCAGCTTCTGCAGGTGGTGAGGGCGAGAAGAGCGCAGAA
GCTGCTGCCGCTTGAAGGGCTCCTCTTCAGGTTGCCAGCTAGATCCTTTTTGGTTTAATTATCTGTTTTTATGGTTTACA
TTTAAGAGTTGAACTGCCTGTTATCGATACAGTGGTCTTGTTTGGTCGATGATAAAACTGTTCTGTTTTTCATCTTAAAG
ATGCTAAGTTGCCCNGCTCAATGACTATGTTGGTACTCCTAGTTTGATATCACTTCTGGCTGTTTATTGACCATGTTACT
AT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11175.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis