Browse Element(s) Details


Os.11421.2.S1_x_at

Description gb:U16747.1
DB_XREF= gi:571505
TID=Os.11421.2
CNT=8
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.11421 (NCBI UniGene Cluster)
UG_TITLE=Clone SI2 sucrose-regulated mRNA sequence
DEF=Oryza sativa clone SI2 sucrose-regulated mRNA sequence.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5817011/11Stem-specific protein TSJT1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g58120OsAffx.13537.1.S1_at11/113+33030388..33034068expressed protein
LOC_Os03g58130Os.9070.1.S1_at5/113+33035110..33038349Thioredoxin-like protein 1, putative, expressed
LOC_Os03g58140Os.49698.1.S1_at9/113+33037934..33040418Uncharacterized protein family UPF0005 containing protein, expressed
LOC_Os03g58150Os.7667.1.S1_x_at11/113+33041956..33044330Uncharacterized protein family UPF0005 containing protein, expressed
LOC_Os03g58150Os.9959.1.S1_at10/113+33041956..33044330Uncharacterized protein family UPF0005 containing protein, expressed
LOC_Os03g58160Os.5364.1.S1_at11/113+33044774..33047981HSF-type DNA-binding domain containing protein, expressed
LOC_Os03g58170Os.54750.1.S1_at11/113+33049599..33057132Stem-specific protein TSJT1, putative, expressed
LOC_Os03g58170Os.11421.2.S1_x_at11/113+33049599..33057132Stem-specific protein TSJT1, putative, expressed
LOC_Os03g58170Os.11421.1.S1_at11/113+33049599..33057132Stem-specific protein TSJT1, putative, expressed
LOC_Os03g58180NANA3+33076510..33076953hypothetical protein
LOC_Os03g58190OsAffx.13538.1.S1_x_at11/113+33077557..33080431expressed protein
LOC_Os03g58190Os.56300.1.S1_at11/113+33077557..33080431expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009733biological_processresponse to auxin stimulus
GO:0010044biological_processresponse to aluminum ion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11421.2.S1_x_at--411--10831Chr03:33056429..33056453 (25 bp)
TTGTGGAAAATCCTCTGCACCATTC
LOC_Os03g58170
Os.11421.2.S1_x_at--141--5051Chr03:33056595..33056619 (25 bp)
GCAGAGCTACGAACACCCTATGAAT
LOC_Os03g58170
Os.11421.2.S1_x_at--562--1031Chr03:33056621..33056645 (25 bp)
AGGTGAAACCAGTGCCGAGGCTCGA
LOC_Os03g58170
Os.11421.2.S1_x_at--414--6311Chr03:33056786..33056810 (25 bp)
GATGACCTAGAAACCTTTGCTGCAA
LOC_Os03g58170
Os.11421.2.S1_x_at--913--831Chr03:33056815..33056839 (25 bp)
ATGGAGAGCACTAGGCTTCCGGGTT
LOC_Os03g58170
Os.11421.2.S1_x_at--1060--9231Chr03:33056832..33056856 (25 bp)
TCCGGGTTGTCCACGGTTACAAGTG
LOC_Os03g58170
Os.11421.2.S1_x_at--95--10551Chr03:33056877..33056901 (25 bp)
TTCATCTGGATGGTCAGCCTTGTGC
LOC_Os03g58170
Os.11421.2.S1_x_at--361--9131Chr03:33056899..33056923 (25 bp)
TGCTGTGCTGCTGTCTGAAATTTCT
LOC_Os03g58170
Os.11421.2.S1_x_at--221--8711Chr03:33056923..33056947 (25 bp)
TGTCCTGTCCACCATTACTGAAGAA
LOC_Os03g58170
Os.11421.2.S1_x_at--901--5871Chr03:33056951..33056975 (25 bp)
GAGCGTGTGGGTCTTGAATTTCCAA
LOC_Os03g58170
Os.11421.2.S1_x_at--1153--2371Chr03:33056978..33057002 (25 bp)
AAACGCAATGCCTTACAGATGTGTA
LOC_Os03g58170
Target Sequence 
TTGTGGAAAATCCTCTGCACCATTCNCTANAGGTTTCTTCTTCACCACATCCGGAGGACTGCAGAGCTACGAACACCCTA
TGAATGAGGTGAAACCAGTGCCGAGGCTCGACAGCAAGGGGGAGGTANNCGGCACAACGTACACGGTCNNCGCGAAGGNN
AAGAAGGATANCAGCANTTCCTAGAGTTGNCAGCGCTGCGGATTGGTNCTCGCAATACTAAANCCGTATAAATCGTCAGA
AGCATATGGTATGATGACCTAGAAACCTTTGCTGCAATTACATGGAGAGCACTAGGCTTCCGGGTTGTCCACGGTTACAA
GTGGGCATTTGCNATCTGAAATGTTCATCTGGATGGTCAGCCTTGTGCTGTGCTGCTGTCTGAAATTTCTGTCCTGTCCA
CCATTACTGAAGAATGAGAGCGTGTGGGTCTTGAATTTCCAATAAAACGCAATGCCTTACAGATGTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11421.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis