Browse Element(s) Details


Os.11513.1.S1_at

Description gb:AK107485.1
DB_XREF= gi:32992694
TID=Os.11513.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.11513 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-129-C08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-129-C08, full insert sequence.
FL= gb:AK107485.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3814011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g38090OsAffx.7828.1.S1_at11/1112+23360442..23361839F-box domain containing protein
LOC_Os12g38100OsAffx.7829.1.S1_at11/1112+23365498..23366323expressed protein
LOC_Os12g38110Os.3382.1.S1_at11/1112+23369158..23375239Importin-beta N-terminal domain containing protein, expressed
LOC_Os12g38110Os.47880.1.A1_at11/1112+23369158..23375239Importin-beta N-terminal domain containing protein, expressed
LOC_Os12g38110Os.22820.1.A1_at5/1112+23369158..23375239Importin-beta N-terminal domain containing protein, expressed
LOC_Os12g38110Os.56154.1.S1_s_at4/1112+23369158..23375239Importin-beta N-terminal domain containing protein, expressed
LOC_Os12g38120Os.52605.1.S1_at11/1112+23376512..23377537Thaumatin family protein, expressed
LOC_Os12g38130NANA12+23384971..23385219hypothetical protein
LOC_Os12g38140Os.11513.1.S1_at11/1112+23386517..23387326expressed protein
LOC_Os12g38150Os.6116.1.S1_x_at11/1112+23394201..23395189thaumatin-like cytokinin-binding protein, putative, expressed
LOC_Os12g38150Os.6116.1.S1_at11/1112+23394201..23395189thaumatin-like cytokinin-binding protein, putative, expressed
LOC_Os12g38160OsAffx.32078.1.S1_at11/1112+23396535..23397786hypothetical protein
LOC_Os12g38170Os.17108.1.S1_at11/1112+23401918..23403053Pathogenesis-related protein 5 precursor, putative, expressed
LOC_Os12g38180Os.50671.1.S1_x_at11/1112+23408631..23413654Heat shock cognate 70 kDa protein 2, putative, expressed
LOC_Os12g38180Os.38164.1.S2_at11/1112+23408631..23413654Heat shock cognate 70 kDa protein 2, putative, expressed
LOC_Os12g38180Os.38164.1.S1_at11/1112+23408631..23413654Heat shock cognate 70 kDa protein 2, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11513.1.S1_at--869--7451Chr12:23386837..23386861 (25 bp)
GTGGTACCAGGTGGACAACCGCCAG
LOC_Os12g38140
Os.11513.1.S1_at--461--2811Chr12:23387003..23387027 (25 bp)
AAGATCATCTACTACAGCCCGTGAT
LOC_Os12g38140
Os.11513.1.S1_at--177--10071Chr12:23387061..23387085 (25 bp)
TAGTGGGTGATTAGGCCGTCTATTA
LOC_Os12g38140
Os.11513.1.S1_at--920--211Chr12:23387100..23387124 (25 bp)
ATTTGGATCGTCGTTGAGTCCGTCT
LOC_Os12g38140
Os.11513.1.S1_at--709--6651Chr12:23387112..23387136 (25 bp)
GTTGAGTCCGTCTACTAGCTATATG
LOC_Os12g38140
Os.11513.1.S1_at--751--10011Chr12:23387147..23387171 (25 bp)
TAGCTTTAGCTAGTGAGTGTGTCAG
LOC_Os12g38140
Os.11513.1.S1_at--634--5651Chr12:23387177..23387201 (25 bp)
GACAGTGTCACGTCATCGCATGCAT
LOC_Os12g38140
Os.11513.1.S1_at--188--4951Chr12:23387206..23387230 (25 bp)
GCATTGATGTCGACATGTCCTCGTA
LOC_Os12g38140
Os.11513.1.S1_at--531--771Chr12:23387220..23387244 (25 bp)
ATGTCCTCGTAATGTGCGTCGTGTT
LOC_Os12g38140
Os.11513.1.S1_at--228--2991Chr12:23387230..23387254 (25 bp)
AATGTGCGTCGTGTTTTGTCTTGTC
LOC_Os12g38140
Os.11513.1.S1_at--1016--3611Chr12:23387249..23387273 (25 bp)
CTTGTCGTGTTGTTGATTAATCCTC
LOC_Os12g38140
Target Sequence 
GTGGTACCAGGTGGACAACCGCCAGGCCGGGTCGCCGGTGAAGGTCACCGTGACGCCGCACGGCCGGCCGCTCCAGGGCC
ACTGCCCCGCCGCCGGGTGCCGCGGCGGCGGCCAGTGCTTCGCCGACGCCGTCCCCGGCGGCAACTGCCACGCCGTCGAC
GAGCTCAAGATCATCTACTACAGCCCGTGATTTTGGTTTTGGTTTGGTTAAATTTCGTTTGGATTAGTGGGTGATTAGGC
CGTCTATTAGTTTTAAGTTAATCATTTGGATCGTCGTTGAGTCCGTCTACTAGCTATATGTAGCTACTGCTAGCTTTAGC
TAGTGAGTGTGTCAGTGTGTGACAGTGTCACGTCATCGCATGCATGCATGCATTGATGTCGACATGTCCTCGTAATGTGC
GTCGTGTTTTGTCTTGTCGTGTTGTTGATTAATCCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11513.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis