Browse Element(s) Details


Os.11572.1.S1_at

Description gb:AK101189.1
DB_XREF= gi:32986398
TID=Os.11572.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11572 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033030E21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033030E21, full insert sequence.
FL= gb:AK101189.1 gb:AK120291.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0120011/11leucine-rich repeat family protein, putative, expressed
LOC_Os11g012005/11leucine-rich repeat family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g01140Os.8642.1.S1_a_at11/1112+74285..88965Nonphototropic hypocotyl protein 1, putative, expressed
LOC_Os12g01140Os.8642.4.S1_x_at11/1112+74285..88965Nonphototropic hypocotyl protein 1, putative, expressed
LOC_Os12g01140Os.53644.1.S1_at1/1112+74285..88965Nonphototropic hypocotyl protein 1, putative, expressed
LOC_Os12g01150OsAffx.7452.1.S1_at11/1112+90859..91328hypothetical protein
LOC_Os12g01160Os.7883.1.A1_at6/1112+92091..94423trans-2-enoyl-CoA reductase, mitochondrial precursor, putative
LOC_Os12g01170Os.2616.1.S1_at10/1112+95642..98986tonneau 1b, putative, expressed
LOC_Os12g01180Os.50258.2.S1_a_at11/1112+99803..103005WRKY DNA binding domain containing protein, expressed
LOC_Os12g01180Os.50258.1.S1_at11/1112+99803..103005WRKY DNA binding domain containing protein, expressed
LOC_Os12g01190Os.15622.1.S1_at11/1112+104922..111632RNA recognition motif family protein, expressed
LOC_Os12g01200Os.11572.1.S1_at11/1112+111744..119224leucine-rich repeat family protein, putative, expressed
LOC_Os12g01210Os.47934.1.S1_x_at11/1112+124923..127272pentatricopeptide, putative, expressed
LOC_Os12g01210Os.47934.1.S1_at11/1112+124923..127272pentatricopeptide, putative, expressed
LOC_Os12g01220Os.6077.1.S1_at11/1112+127352..132372expressed protein
LOC_Os12g01230OsAffx.31535.2.S1_x_at11/1112+132654..134949expressed protein
LOC_Os12g01230OsAffx.31535.1.S1_at9/1112+132654..134949expressed protein
LOC_Os12g01240Os.6196.1.S1_x_at11/1112+135267..140056mitochondrial substrate carrier family protein, putative, expressed
LOC_Os12g01240Os.6196.2.S1_at9/1112+135267..140056mitochondrial substrate carrier family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11572.1.S1_at--893--72Chr12:112170..112194 (25 bp)
ATTGCCATCGAGCTGCAACGGGAGC
LOC_Os12g01200
Os.11572.1.S1_at--469--7091Chr12:112095..112119 (25 bp)
GTCAACACGACAGGCAGTCTGCAAG
LOC_Os12g01200
Os.11572.1.S1_at--1117--3011Chr12:112059..112083 (25 bp)
AATGCGTCGTTTGATGAGCTGCTCA
LOC_Os12g01200
Os.11572.1.S1_at--707--9612Chr12:112037..112061 (25 bp)
TCATGCGCCCAGGTCTCAGGTAGAG
LOC_Os12g01200
Os.11572.1.S1_at--1024--5111Chr12:112009..112033 (25 bp)
GCACATACGGATTACAGACTCTTCT
LOC_Os12g01200
Os.11572.1.S1_at--1140--5672Chr12:111937..111961 (25 bp)
GACTTGTTTAGATTTGCCACCGAGC
LOC_Os12g01200
Os.11572.1.S1_at--600--7712Chr12:111902..111926 (25 bp)
GGGTGAATTTGTCCTTCAGGTCGTC
LOC_Os12g01200
Os.11572.1.S1_at--23--9651Chr12:111887..111911 (25 bp)
TCAGGTCGTCGTGCACTTTTGAAAT
LOC_Os12g01200
Os.11572.1.S1_at--28--6451Chr12:111862..111886 (25 bp)
GATCATGTGCATTCATTCTCGTTCA
LOC_Os12g01200
Os.11572.1.S1_at--622--9512Chr12:111846..111870 (25 bp)
TCTCGTTCATTCTTACATTGGCTCT
LOC_Os12g01200
Os.11572.1.S1_at--518--6551Chr12:111747..111771 (25 bp)
GATTATCAGAACGTTTCCTTTCAGA
LOC_Os12g01200
Target Sequence 
ATTGCCATCGAGCTGCAACGGGAGCTGCCCTCCAGCATTCACCACCTCATGTCCAAGACGTCTCCCTCCGAAGCCGTCAA
CACGACAGGCAGTCTGCAAGACCTGGAGCAGAATGCGTCGTTTGATGAGCTGCTCATGCGCCCAGGTCTCAGGTAGAGGT
AGCACATACGGATTACAGACTCTTCTAATACTATATTTCTAATATTCGTTGATAGGTTAAGCAAGCTGTGCATGACTTGT
TTAGATTTGCCACCGAGCAACGAATTTTGGGTGAATTTGTCCTTCAGGTCGTCGTGCACTTTTGAAATGATCATGTGCAT
TCATTCTCGTTCATTCTTACATTGGCTCTTGTTCTCTTCTCCCCCTCGAATTCTTGTATCAAAAACGACCAAAAAACAAG
ATCGATTCATAATACCGTGATATGATTATCAGAACGTTTCCTTTCAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11572.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis