Browse Element(s) Details


Os.11668.1.S1_at

Description gb:AK073626.1
DB_XREF= gi:32983649
TID=Os.11668.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.11668 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033050J24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033050J24, full insert sequence.
FL= gb:AK063807.1 gb:AK073626.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1939011/11Seed maturation protein PM36, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g19350Os.57424.1.S1_at11/113+10866549..10877809ATP-dependent protease La family protein, expressed
LOC_Os03g19350Os.35212.1.S1_x_at1/113+10866549..10877809ATP-dependent protease La family protein, expressed
LOC_Os03g19360OsAffx.32248.1.A1_at8/113+10880636..10882389hypothetical protein
LOC_Os03g19360OsAffx.32260.1.A1_at5/113+10880636..10882389hypothetical protein
LOC_Os03g19370Os.56365.1.S1_at11/113+10884435..10885840bZIP transcription factor family protein, expressed
LOC_Os03g19380Os.10732.1.S1_s_at11/113+10889395..10890371CP12, putative, expressed
LOC_Os03g19390Os.11668.1.S1_at11/113+10890530..10892444Seed maturation protein PM36, putative, expressed
LOC_Os03g19400OsAffx.3275.1.S1_at11/113+10892628..10895524expressed protein
LOC_Os03g19410Os.9620.1.S1_at11/113+10897165..10904734prolyl oligopeptidase family protein, expressed
LOC_Os03g19410Os.11159.1.S1_at1/113+10897165..10904734prolyl oligopeptidase family protein, expressed
LOC_Os03g19420Os.9311.1.S1_at11/113+10905302..10906769Nicotianamine synthase 2, putative, expressed
LOC_Os03g19436Os.1478.1.S1_at11/113+10908316..10913811Nicotianamine synthase 1, putative, expressed
LOC_Os03g19436OsAffx.25145.1.S1_at7/113+10908316..10913811Nicotianamine synthase 1, putative, expressed
LOC_Os03g19436Os.30136.1.S1_at4/113+10908316..10913811Nicotianamine synthase 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11668.1.S1_at--583--10311Chr03:10891016..10891040 (25 bp)
TTTCTCCAAAGCTTCAGCGAGCCAG
LOC_Os03g19390
Os.11668.1.S1_at--557--4411Chr03:10890996..10891020 (25 bp)
GCCAGAGATCAGCTACGTTGTTGCC
LOC_Os03g19390
Os.11668.1.S1_at--485--6631Chr03:10890980..10891004 (25 bp)
GTTGTTGCCATAACTACCTTTTGGA
LOC_Os03g19390
Os.11668.1.S1_at--1139--3971Chr03:10890945..10890969 (25 bp)
CGTGTACCAGGATAGCTTTGCTTTC
LOC_Os03g19390
Os.11668.1.S1_at--1027--8171Chr03:10890863..10890887 (25 bp)
GGAAGCCCTGAGTTCAAGCAGTACT
LOC_Os03g19390
Os.11668.1.S1_at--930--2711Chr03:10890848..10890872 (25 bp)
AAGCAGTACTGCCAGTCTCTGCAGA
LOC_Os03g19390
Os.11668.1.S1_at--468--2791Chr03:10890769..10890793 (25 bp)
AAGAGGCCTTCCTTCGGGTGCTTGA
LOC_Os03g19390
Os.11668.1.S1_at--967--10851Chr03:10890736..10890760 (25 bp)
TTGGTTTCTGGGACATGAGCTCTTC
LOC_Os03g19390
Os.11668.1.S1_at--190--5911Chr03:10890720..10890744 (25 bp)
GAGCTCTTCTCGATCATGAACGGCA
LOC_Os03g19390
Os.11668.1.S1_at--313--1091Chr03:10890621..10890645 (25 bp)
AGTGTACTACTGTGTTTTCCTCTTC
LOC_Os03g19390
Os.11668.1.S1_at--958--9491Chr03:10890580..10890604 (25 bp)
TCTCCTTACTCCCATGAACATTGAT
LOC_Os03g19390
Target Sequence 
TTTCTCCAAAGCTTCAGCGAGCCAGAGATCAGCTACGTTGTTGCCATAACTACCTTTTGGATAATTGAAACCGTGTACCA
GGATAGCTTTGCTTTCTGTATAGAAGAAGGCAACAAGACGCCACCTGAACTCCTGGGGACCTGCCAGAGATGGGGAAGCC
CTGAGTTCAAGCAGTACTGCCAGTCTCTGCAGAGAATTGCAGATCGCTGCCTCGCAGAAGCGTCAGCTGANTGCTGCGAG
GAGTGCTGAAGAGGCCTTCCTTCGGGTGCTTGAGCTGGAAATTGGTTTCTGGGACATGAGCTCTTCTCGATCATGAACGG
CAACAGCATCTCGATCATGAACTACTTGGGAGAAATAATCGAATAATGGTGCAGCCGGTTCCATACCGAACCCTGCAGTG
TACTACTGTGTTTTCCTCTTCCTTTTATCCCCATTTCTCTCCTTACTCCCATGAACATTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11668.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis