Browse Element(s) Details


Os.11706.1.S1_x_at

Description gb:AK100715.1
DB_XREF= gi:32985924
TID=Os.11706.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.11706 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023115O03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023115O03, full insert sequence.
FL= gb:AK100715.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g259201/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g25880OsAffx.23396.1.S1_s_at11/111+14661787..14665907dephospho-CoA kinase family protein, expressed
LOC_Os01g25880Os.23667.1.A1_at11/111+14661787..14665907dephospho-CoA kinase family protein, expressed
LOC_Os01g25880Os.57362.1.S1_at1/111+14661787..14665907dephospho-CoA kinase family protein, expressed
LOC_Os01g25880OsAffx.23396.1.S1_at1/111+14661787..14665907dephospho-CoA kinase family protein, expressed
LOC_Os01g25890NANA1+14673295..14675091retrotransposon protein, putative, unclassified
LOC_Os01g25900NANA1+14675717..14678851retrotransposon protein, putative, unclassified
LOC_Os01g25910OsAffx.19678.1.S1_at10/111+14682241..14684550hypothetical protein
LOC_Os01g25910OsAffx.13774.1.S1_at1/111+14682241..14684550hypothetical protein
LOC_Os01g25910OsAffx.11264.1.S1_s_at1/111+14682241..14684550hypothetical protein
LOC_Os01g25910Os.27004.1.A1_at1/111+14682241..14684550hypothetical protein
LOC_Os01g25920Os.11829.1.S2_at11/111+14685138..14688095hypothetical protein
LOC_Os01g25920Os.11829.1.S1_at10/111+14685138..14688095hypothetical protein
LOC_Os01g25920Os.38368.1.S1_s_at1/111+14685138..14688095hypothetical protein
LOC_Os01g25920OsAffx.18868.5.S1_x_at1/111+14685138..14688095hypothetical protein
LOC_Os01g25920Os.11706.1.S1_x_at1/111+14685138..14688095hypothetical protein
LOC_Os01g25930NANA1+14690301..14691545transposon protein, putative, unclassified
LOC_Os01g25940NANA1+14695953..14696432hypothetical protein
LOC_Os01g25950Os.53142.1.S1_at3/111+14698069..14700868retrotransposon protein, putative, unclassified
LOC_Os01g25960OsAffx.27924.1.S1_at2/111+14703918..14707124retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g25960OsAffx.26951.1.S1_at1/111+14703918..14707124retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g25970NANA1+14708286..14709464retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g25980NANA1+14711545..14712117retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g25990Os.5375.1.S1_at11/111+14712629..14720895esterase/lipase/thioesterase family protein, putative, expressed
LOC_Os01g25990OsAffx.31138.1.S1_x_at2/111+14712629..14720895esterase/lipase/thioesterase family protein, putative, expressed
LOC_Os01g25990Os.54405.1.S1_at1/111+14712629..14720895esterase/lipase/thioesterase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11706.1.S1_x_at--804--6471Chr02:7992914..7992938 (25 bp)
GATACTCAGAGCCTCCTTCGACAAA
NONE
Os.11706.1.S1_x_at--508--1133Chr04:16239145..16239169 (25 bp)
AGTCCTCCCTAAGCTAGTTGTATGC
NONE
Os.11706.1.S1_x_at--160--10032Chr04:16238525..16238549 (25 bp)
TAGAACTTGGTGCTAGCTGCTGGTT
NONE
Os.11706.1.S1_x_at--683--7911Chr02:7992268..7992292 (25 bp)
GGTTGCTTGCAAGTTGGCGCTTTTG
NONE
Os.11706.1.S1_x_at--64--8512Chr04:16238436..16238457 (22 bp)
TGGCACTAGTTGTTGGCTGCTGCAG
NONE
Os.11706.1.S1_x_at--642--8331Chr02:7992182..7992206 (25 bp)
GGCTGCTGCAGGATGCAGTCCAGAA
NONE
Os.11706.1.S1_x_at--714--3451Chr02:7992167..7992191 (25 bp)
CAGTCCAGAAGTGTAGTGGGTGCTT
NONE
Os.11706.1.S1_x_at--724--3911Chr02:7992127..7992151 (25 bp)
CTGGCTATTGGCAAGATGCAGGCTG
NONE
Os.11706.1.S1_x_at--402--651Chr02:7992112..7992136 (25 bp)
ATGCAGGCTGAGACTTAGTAGTGGC
NONE
Os.11706.1.S1_x_at--1086--8451Chr02:7992057..7992081 (25 bp)
TGGCACTACCTGTAGTAACTTTGGT
NONE
Os.11706.1.S1_x_at--24--10071Chr02:7992045..7992069 (25 bp)
TAGTAACTTTGGTAGTCGGCTGGGA
NONE
Target Sequence 
GATACTCAGAGCCTCCTTCGACAAATGATAGCATTTGGACAGGGTCAGATCAGTCCTCCCTAAGCTAGTTGTATGCTCAG
GAATGAGGTGGATGAGCTTGGAATTTGATGGCTGGTGTTAGTGTAGTTGAACTTGGTGGTGTATGTGGCTGCTATTGTAT
GGTGTATGTTGCTGCTAGAACTTGGTGCTAGCTGCTGGTTGCTTGCAAGTTGGCGCTTTTGGTGGCCGGAGTTTTTTTTT
TCGTTGGTTGCTGGAACATAGGATTTTTTGGCACTAGTTGTTGGCTGCTGCAGGATGCAGTCCAGAAGTGTAGTGGGTGC
TTGGTGGAATTTTTTTGCTGGCTATTGGCAAGATGCAGGCTGAGACTTAGTAGTGGCTGCTAGGTGGANTTTTTTGGTGC
CGGAACTTGGCACTACCTGTAGTAACTTTGGTAGTCGGCTGGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11706.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis