Browse Element(s) Details


Os.11760.1.S1_at

Description gb:AK073025.1
DB_XREF= gi:32983048
TID=Os.11760.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11760 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023149N08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023149N08, full insert sequence.
FL= gb:AK119386.1 gb:AK073025.1 gb:AK061820.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5530011/11CCR4-NOT transcription complex subunit 7, putative, expressed
LOC_Os05g458801/11Choline/ethanolamine kinase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g55240OsAffx.24881.1.S1_at10/112+33823002..33823853hypothetical protein
LOC_Os02g55250OsAffx.27510.1.S1_at11/112+33828040..33832179Helix-loop-helix DNA-binding domain containing protein
LOC_Os02g55260Os.24391.1.A1_at11/112+33832794..33837763DEAD/DEAH box helicase family protein, expressed
LOC_Os02g55270OsAffx.24882.1.S1_at11/112+33838016..33839278NLI interacting factor-like phosphatase family protein
LOC_Os02g55280OsAffx.12653.1.S1_at11/112+33840744..33841912NLI interacting factor-like phosphatase family protein
LOC_Os02g55290OsAffx.24964.5.S1_at11/112+33845428..33847925hypothetical protein
LOC_Os02g55290Os.21430.1.S1_at4/112+33845428..33847925hypothetical protein
LOC_Os02g55290OsAffx.24964.4.S1_x_at1/112+33845428..33847925hypothetical protein
LOC_Os02g55300Os.11760.1.S1_at11/112+33848294..33851178CCR4-NOT transcription complex subunit 7, putative, expressed
LOC_Os02g55300Os.11760.1.S2_at10/112+33848294..33851178CCR4-NOT transcription complex subunit 7, putative, expressed
LOC_Os02g55310OsAffx.24883.1.S1_at11/112+33851699..33853536pentatricopeptide, putative, expressed
LOC_Os02g55320Os.5243.1.S1_at11/112+33853956..33858973Two-component response regulator ARR12, putative, expressed
LOC_Os02g55330Os.52557.1.S1_at10/112+33870784..33874639expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009451biological_processRNA modification
GO:0009611biological_processresponse to wounding
GO:0004103molecular_functioncholine kinase activity
GO:0004540molecular_functionribonuclease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11760.1.S1_at--716--871Chr02:33849231..33849255 (25 bp)
AGGCCGGTTCAGATAGCTTGGTCAC
LOC_Os02g55300
Os.11760.1.S1_at--321--1271Chr02:33849241..33849265 (25 bp)
AGATAGCTTGGTCACTTCATGCGCG
LOC_Os02g55300
Os.11760.1.S1_at--948--10531Chr02:33849256..33849280 (25 bp)
TTCATGCGCGTTCTGGAAGCTCAAG
LOC_Os02g55300
Os.11760.1.S1_at--1113--2691Chr02:33849272..33849296 (25 bp)
AAGCTCAAGGATTCGTTCTTCGCTG
LOC_Os02g55300
Os.11760.1.S1_at--839--9571Chr02:33849288..33849312 (25 bp)
TCTTCGCTGGCTCTACCGAGAAATA
LOC_Os02g55300
Os.11760.1.S1_at--62--8011Chr02:33849366..33849390 (25 bp)
GGATGGTACTCCTCTTTGAATTTTA
LOC_Os02g55300
Os.11760.1.S1_at--594--6931Chr02:33849450..33849474 (25 bp)
GTAGGTCAAGTTTGTCTCACTCCAT
LOC_Os02g55300
Os.11760.1.S1_at--188--6372Chr05:26501829..26501848 (20 bp)
GATCCTAGTGTTCTTCAGTTATTCG
LOC_Os05g45880
Os.11760.1.S1_at--616--731Chr02:33849536..33849560 (25 bp)
ATGTTAAGTTGTTCTGTCCGCTTTC
LOC_Os02g55300
Os.11760.1.S1_at--298--10331Chr02:33849557..33849581 (25 bp)
TTTCATTTTCTCCTACCTGGTTTAG
LOC_Os02g55300
Os.11760.1.S1_at--868--7771Chr02:33849698..33849722 (25 bp)
GGTGCGGGTACATCAAAGTGCTCAA
LOC_Os02g55300
Target Sequence 
AGGCCGGTTCAGATAGCTTGGTCACTTCATGCGCGTTCTGGAAGCTCAAGGATTCGTTCTTCGCTGGCTCTACCGAGAAA
TATGCTGGAGTGCTGTATGGGCTCAATGCGGAGAATGTTGTCAGTGCGCATTGATGGATGGTACTCCTCTTTGAATTTTA
GCTTTGTGAATGGATTGATTTAGGACAGAAAATGTGACAAATGATCAAGATGATGTTATGTAGGTCAAGTTTGTCTCACT
CCATTTGGGTTTAATGTGATCCTAGTGTTCTTCAGTTATTCGCGNTGAAATAGTGAACTGTATTTATGTTAAGTTGTTCT
GTCCGCTTTCATTTTCTCCTACCTGGTTTAGTTAGATAGGAAAGAAAAATCACCTTTAAGGATTAGGAGATGGTAAAATG
AATATATTTTGTTGCTGTTTTGTCATTGATATGTATAGCATGGAAGCTGGTTGTTTCCAAAGAGTGGGGTGCGGGTACAT
CAAAGTGCTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11760.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis