Browse Element(s) Details


Os.12244.1.S1_at

Description gb:AB110191.1
DB_XREF= gi:32352179
TID=Os.12244.1
CNT=204
FEA=FLmRNA
TIER=FL+Stack
STK=9
UG=Os.12244 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) mRNA for heat shock protein 18, complete cds, clone: 21C4AB003.
PROD=heat shock protein 18
FL= gb:AK119616.1 gb:AK119239.1 gb:AK119675.1 gb:AK119664.1 gb:AK073671.1 gb:AB110191.1 gb:AK104129.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1596011/1117.4 kDa class I heat shock protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g15900Os.12159.1.S1_s_at11/113+8755236..8765107SH3 domain containing protein, expressed
LOC_Os03g15900Os.12159.1.S1_at11/113+8755236..8765107SH3 domain containing protein, expressed
LOC_Os03g15910Os.37394.1.S1_at3/113+8767687..8768082hypothetical protein
LOC_Os03g15920Os.10388.1.S1_at11/113+8767701..8769431expressed protein
LOC_Os03g15930Os.15901.1.S1_at11/113+8769800..8774784OTU-like cysteine protease family protein, expressed
LOC_Os03g15930Os.15901.2.S1_x_at9/113+8769800..8774784OTU-like cysteine protease family protein, expressed
LOC_Os03g15930Os.15901.2.S1_at8/113+8769800..8774784OTU-like cysteine protease family protein, expressed
LOC_Os03g15940Os.8225.1.S1_at11/113+8776940..8778881Pollen-specific protein SF3, putative, expressed
LOC_Os03g15950Os.14701.1.S1_a_at11/113+8779850..8785587Enolase, C-terminal TIM barrel domain containing protein, expressed
LOC_Os03g15950Os.57467.1.A1_x_at5/113+8779850..8785587Enolase, C-terminal TIM barrel domain containing protein, expressed
LOC_Os03g15960Os.12244.1.S1_at11/113+8784620..878560917.4 kDa class I heat shock protein, putative, expressed
LOC_Os03g15960Os.57467.1.S1_x_at5/113+8784620..878560917.4 kDa class I heat shock protein, putative, expressed
LOC_Os03g15960Os.37773.1.S1_x_at2/113+8784620..878560917.4 kDa class I heat shock protein, putative, expressed
LOC_Os03g15970OsAffx.10071.1.S1_at11/113+8786381..8788265transposon protein, putative, Mariner sub-class
LOC_Os03g15980OsAffx.31659.1.S1_s_at11/113+8788487..8788932hypothetical protein
LOC_Os03g15980OsAffx.31659.2.S1_at8/113+8788487..8788932hypothetical protein
LOC_Os03g15990OsAffx.25104.1.S1_at11/113+8794075..8796397hydroxyproline-rich glycoprotein family protein, putative
LOC_Os03g16000Os.34102.1.S1_a_at10/113+8798197..8803386Variant SH3 domain containing protein, expressed
LOC_Os03g16010Os.10798.1.S1_at11/113+8806805..8812628protein kinase, putative, expressed
LOC_Os03g16010Os.26733.3.S1_x_at3/113+8806805..8812628protein kinase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006979biological_processresponse to oxidative stress
GO:0009408biological_processresponse to heat
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12244.1.S1_at--1130--3891Chr03:8785382..8785406 (25 bp)
CTGGTTTGTCTGTCGTGAAGGAGCA
LOC_Os03g15960
Os.12244.1.S1_at--635--7271Chr03:8785428..8785452 (25 bp)
GTCCAGTGTGTGTCCGTGTCTGTCT
LOC_Os03g15960
Os.12244.1.S1_at--774--7251Chr03:8785439..8785463 (25 bp)
GTCCGTGTCTGTCTTGAACAGTCGT
LOC_Os03g15960
Os.12244.1.S1_at--539--2491Chr03:8785455..8785479 (25 bp)
AACAGTCGTGTGTCGCGTCGTGTCA
LOC_Os03g15960
Os.12244.1.S1_at--1110--9331Chr03:8785467..8785491 (25 bp)
TCGCGTCGTGTCACTGGGTCAGTGT
LOC_Os03g15960
Os.12244.1.S1_at--963--7811Chr03:8785483..8785507 (25 bp)
GGTCAGTGTGTTGTTCCAGTGCGCC
LOC_Os03g15960
Os.12244.1.S1_at--1104--8671Chr03:8785489..8785513 (25 bp)
TGTGTTGTTCCAGTGCGCCGTTCAT
LOC_Os03g15960
Os.12244.1.S1_at--716--1131Chr03:8785500..8785524 (25 bp)
AGTGCGCCGTTCATCAGCCGATCAG
LOC_Os03g15960
Os.12244.1.S1_at--30--6751Chr03:8785508..8785532 (25 bp)
GTTCATCAGCCGATCAGCGTCTGTA
LOC_Os03g15960
Os.12244.1.S1_at--170--6431Chr03:8785519..8785543 (25 bp)
GATCAGCGTCTGTACCGGTCTTTTG
LOC_Os03g15960
Os.12244.1.S1_at--932--3991Chr03:8785525..8785549 (25 bp)
CGTCTGTACCGGTCTTTTGCAACTA
LOC_Os03g15960
Target Sequence 
CTGGTTTGTCTGTCGTGAAGGAGCAAATAAAATCGGGTCCGGTTGAGTCCAGTGTGTGTCCGTGTCTGTCTTGAACAGTC
GTGTGTCGCGTCGTGTCACTGGGTCAGTGTGTTGTTCCAGTGCGCCGTTCATCAGCCGATCAGCGTCTGTACCGGTCTTT
TGCAACTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12244.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis