Browse Element(s) Details


Os.12246.1.S1_at

Description gb:AK070897.1
DB_XREF= gi:32980920
TID=Os.12246.1
CNT=17
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.12246 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023073H14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023073H14, full insert sequence.
FL= gb:AK070897.1 gb:AK059275.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4465011/11Complex 1 protein containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g44580OsAffx.28901.4.S1_x_at11/117+26610959..26611705phototropic-responsive NPH3 family protein, putative
LOC_Os07g44590Os.56899.1.S1_at11/117+26613798..26615100Peroxidase family protein, expressed
LOC_Os07g44600NANA7+26615540..26616371peroxidase, putative
LOC_Os07g44610Os.8636.1.S1_at11/117+26616961..26620328pyrrolidone-carboxylate peptidase family protein, expressed
LOC_Os07g44610OsAffx.9594.1.S1_at1/117+26616961..26620328pyrrolidone-carboxylate peptidase family protein, expressed
LOC_Os07g44620Os.37651.1.S1_at11/117+26626783..26629563Eukaryotic translation initiation factor 6, putative, expressed
LOC_Os07g44630OsAffx.28902.1.S1_s_at11/117+26629637..26631991Thymidylate kinase family protein, expressed
LOC_Os07g44640Os.54510.1.S1_at11/117+26632178..26635547protein arginine N-methyltransferase 3, putative, expressed
LOC_Os07g44650Os.12246.1.S1_at11/117+26635832..26638211Complex 1 protein containing protein, expressed
LOC_Os07g44660Os.16887.1.S1_at11/117+26638972..26643649xylulose kinase, putative, expressed
LOC_Os07g44670OsAffx.28903.1.S1_x_at9/117+26644926..26652033hypothetical protein
LOC_Os07g44670OsAffx.28903.2.S1_x_at3/117+26644926..26652033hypothetical protein
LOC_Os07g44670Os.50232.1.S1_x_at1/117+26644926..26652033hypothetical protein
LOC_Os07g44680OsAffx.16712.1.S1_at11/117+26660432..26661079hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0003824molecular_functioncatalytic activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12246.1.S1_at--583--7132Chr07:26637684..26637708 (25 bp)
GTCATTGATATGCTCCTGTTTAAGG
LOC_Os07g44650
Os.12246.1.S1_at--916--4432Chr07:26637751..26637775 (25 bp)
GCCATCACGTCATCGGGCAATATGT
LOC_Os07g44650
Os.12246.1.S1_at--536--2891Chr07:26637817..26637841 (25 bp)
AAGGGTCCTCAGACTTCCTGAAGAA
LOC_Os07g44650
Os.12246.1.S1_at--1049--5631Chr07:26637927..26637951 (25 bp)
GAGAACCCACAGCTTTAATTGTTTT
LOC_Os07g44650
Os.12246.1.S1_at--650--572Chr07:26637982..26638006 (25 bp)
ATCCTTCAATCATCTGCGCAGTGTG
LOC_Os07g44650
Os.12246.1.S1_at--322--1111Chr07:26638001..26638025 (25 bp)
AGTGTGGCGCTGTTGCTAGTGAATT
LOC_Os07g44650
Os.12246.1.S1_at--720--7051Chr07:26638030..26638054 (25 bp)
GTAACTTGTAGACTGTACTCTGCAA
LOC_Os07g44650
Os.12246.1.S1_at--96--6752Chr07:26638062..26638086 (25 bp)
GTTCATGAGTTCATACCGTGTGTCA
LOC_Os07g44650
Os.12246.1.S1_at--587--4251Chr07:26638077..26638101 (25 bp)
CCGTGTGTCAATGGGTTCGAACTCA
LOC_Os07g44650
Os.12246.1.S1_at--622--6711Chr07:26638091..26638115 (25 bp)
GTTCGAACTCATGTACCCAGCACAT
LOC_Os07g44650
Os.12246.1.S1_at--156--691Chr07:26638114..26638138 (25 bp)
ATGACCATCACTCGTTTGTCGTGAA
LOC_Os07g44650
Target Sequence 
GTCATTGATATGCTCCTGTTTAAGGGGATGGAGGAGCTGGGCAACATCACCGAACACGCGAAGCAGCGCCATCACGTCAT
CGGGCAATATGTGGTCGGCCAAAAGGGACTGGTGCAGGATATGGAGAAAGACCAAGGGTCCTCAGACTTCCTGAAGAAAT
TCTACACTAGCAATTACTCCTAATCTGNGCTGCAAACTCCTCCTCCTTCAGTAATACCCGAGAAGTGATCTGAATAAGAC
GCTGAGAACCCACAGCTTTAATTGTTTTATCACTGGAATCTTTTTGTTATTCTGCTTGATCCTTCAATCATCTGCGCAGT
GTGGCGCTGTTGCTAGTGAATTGTTTGTAACTTGTAGACTGTACTCTGCAAAGTTGATGTTCATGAGTTCATACCGTGTG
TCAATGGGTTCGAACTCATGTACCCAGCACATGACCATCACTCGTTTGTCGTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12246.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis