Browse Element(s) Details


Os.12286.1.S2_a_at

Description gb:CB649218
DB_XREF= gi:29644211
DB_XREF=OSJNEb13A14.r
CLONE=OSJNEb13A14
TID=Os.12286.1
CNT=72
FEA=FLmRNA
TIER=Stack
STK=6
UG=Os.12286 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) mRNA for hypothetical protein, complete cds, clone: 14FPB077
FL= gb:AK068510.1 gb:AK100865.1 gb:AB110184.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5269011/11CBS domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g52630Os.10701.1.S1_at11/113+30132228..30135671endo-1,4-beta-glucanase Cel1, putative, expressed
LOC_Os03g52640Os.27782.1.S1_at11/113+30138771..30142128expressed protein
LOC_Os03g52650OsAffx.3586.1.S1_s_at11/113+30143453..30144678Syntaxin-related protein KNOLLE, putative, expressed
LOC_Os03g52660Os.5148.1.S1_at11/113+30147820..30149331ATP synthase F1, delta subunit family protein, expressed
LOC_Os03g52670Os.37935.1.S1_at11/113+30149372..30150915GRAM domain containing protein, expressed
LOC_Os03g52680Os.18485.1.S1_s_at11/113+30154305..30155477expressed protein
LOC_Os03g52690Os.12286.1.S1_at11/113+30156918..30160996CBS domain containing protein, expressed
LOC_Os03g52690Os.12286.1.S2_a_at11/113+30156918..30160996CBS domain containing protein, expressed
LOC_Os03g52690Os.39828.1.A1_s_at9/113+30156918..30160996CBS domain containing protein, expressed
LOC_Os03g52700Os.15893.1.A1_at9/113+30165974..30170841expressed protein
LOC_Os03g52710OsAffx.13471.1.S1_at11/113+30172325..30174164expressed protein
LOC_Os03g52720Os.53148.1.S1_at11/113+30174754..30176904magnesium-dependent phosphatase-1 family protein, expressed
LOC_Os03g52730Os.21398.1.S1_at11/113+30178817..30180732magnesium-dependent phosphatase-1 family protein, expressed
LOC_Os03g52740Os.35344.3.S1_x_at5/113+30182052..30185223SWIM zinc finger family protein
LOC_Os03g52740Os.35344.18.S1_x_at5/113+30182052..30185223SWIM zinc finger family protein
LOC_Os03g52740OsAffx.22940.5.S1_x_at1/113+30182052..30185223SWIM zinc finger family protein

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12286.1.S2_a_at--487--3071Chr03:30157977..30158001 (25 bp)
AATCATAGTGCAGGGACGATCTTCC
LOC_Os03g52690
Os.12286.1.S2_a_at--702--7631Chr03:30157965..30157989 (25 bp)
GGGACGATCTTCCAAGTCAACTAAA
LOC_Os03g52690
Os.12286.1.S2_a_at--673--1711Chr03:30157666..30157690 (25 bp)
ACCAGCTGATCACGGTGAAGCCTGA
LOC_Os03g52690
Os.12286.1.S2_a_at--776--5411Chr03:30157650..30157674 (25 bp)
GAAGCCTGATACCAGAGTCCTGCAA
LOC_Os03g52690
Os.12286.1.S2_a_at--165--6111Chr03:30157636..30157660 (25 bp)
GAGTCCTGCAAGCAATGCAGCTGAT
LOC_Os03g52690
Os.12286.1.S2_a_at--375--1451Chr03:30157512..30157536 (25 bp)
AGAAGCGCATCAGGCACATCCCGGT
LOC_Os03g52690
Os.12286.1.S2_a_at--226--8191Chr03:30157415..30157439 (25 bp)
GGAAGAGCTGAACCGGCTCAACGCC
LOC_Os03g52690
Os.12286.1.S2_a_at--653--9831Chr03:30157390..30157414 (25 bp)
TACATCCAGGGTGGCTACTAGGACG
LOC_Os03g52690
Os.12286.1.S2_a_at--1094--8871Chr03:30157332..30157356 (25 bp)
TGAGGCTGTGCCTGTCTGAAAAAGA
LOC_Os03g52690
Os.12286.1.S2_a_at--611--3291Chr03:30157317..30157341 (25 bp)
CTGAAAAAGACTCCCTCTTCCAAAT
LOC_Os03g52690
Os.12286.1.S2_a_at--470--6711Chr03:30157220..30157244 (25 bp)
GTTCGCGTGTATTATATCAATCTGA
LOC_Os03g52690
Target Sequence 
AATCATAGTGCAGGGACGATCTTCCAAGTCAACTAAAGTTGGAGACATCATGACTGAAGAGAACCAGCTGATCACGGTGA
AGCCTGATACCAGAGTCCTGCAAGCAATGCAGCTGATGACAGAGAAGCGCATCAGGCACATCCCGGTGATCGACGGCACG
GGCATGGTTGGGATGGTCTCCATTGGAGACATTGTCCGCGCCGTGGTCAGCGAGCACCGGGAAGAGCTGAACCGGCTCAA
CGCCTACATCCAGGGTGGCTACTAGGACGCCGACGTCGACGTTGGTCACTCGCTCCTGCCATTGAGGCTGTGCCTGTCTG
AAAAAGACTCCCTCTTCCAAATAACGCTCGCTCGGGATGATGACGAAATAGGCCGCGATTTTCCTGGAGAAATTGTTGCC
GAATGTTTCTGNNNNNNNNNCTTGTTCGCGTGTATTATATCAATCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12286.1.S2_a_at     

Putative homologies in rice

Putative homologies in arabidopsis