Browse Element(s) Details


Os.12420.1.S1_at

Description gb:AK105533.1
DB_XREF= gi:32990742
TID=Os.12420.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12420 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative pirin (OJ1484_G09.11), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-127-G12, full insert sequence.
FL= gb:AK105533.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2772010/11Pirin, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g27674OsAffx.17193.2.S1_s_at11/118+16730551..16736719transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g27674OsAffx.17193.1.S1_x_at11/118+16730551..16736719transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g27674OsAffx.1225.1.S1_at11/118+16730551..16736719transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g27674OsAffx.17193.2.S1_x_at10/118+16730551..16736719transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g27674OsAffx.8371.1.S1_at1/118+16730551..16736719transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g27674OsAffx.8372.1.S1_at1/118+16730551..16736719transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g27690OsAffx.22022.1.S1_at2/118+16739537..16739791hypothetical protein
LOC_Os08g27700OsAffx.17195.1.S1_at11/118+16740754..16743564expressed protein
LOC_Os08g27700Os.26894.1.A1_at9/118+16740754..16743564expressed protein
LOC_Os08g27700Os.26894.1.A1_x_at8/118+16740754..16743564expressed protein
LOC_Os08g27710OsAffx.29383.1.S1_x_at1/118+16749942..16750418hypothetical protein
LOC_Os08g27720Os.12420.1.S1_at10/118+16759520..16763514Pirin, putative, expressed
LOC_Os08g27730OsAffx.22021.1.S1_at11/118+16767310..16771221retrotransposon protein, putative, unclassified
LOC_Os08g27730OsAffx.9516.1.S1_at3/118+16767310..16771221retrotransposon protein, putative, unclassified
LOC_Os08g27740OsAffx.19810.4.S1_s_at11/118+16772948..16776833transposon protein, putative, unclassified
LOC_Os08g27740OsAffx.19810.1.S1_x_at11/118+16772948..16776833transposon protein, putative, unclassified
LOC_Os08g27740OsAffx.19810.2.S1_at11/118+16772948..16776833transposon protein, putative, unclassified
LOC_Os08g27740OsAffx.9835.1.S1_at11/118+16772948..16776833transposon protein, putative, unclassified
LOC_Os08g27759OsAffx.17196.1.S1_at11/118+16778875..16784124expressed protein
LOC_Os08g27759OsAffx.29384.1.S1_at11/118+16778875..16784124expressed protein
LOC_Os08g27759OsAffx.29384.3.S1_x_at5/118+16778875..16784124expressed protein
LOC_Os08g27780OsAffx.9832.1.S1_x_at11/118+16786213..16787250Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0010244biological_processresponse to low fluence blue light
GO:0005516molecular_functioncalmodulin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12420.1.S1_at--503--5871Chr08:16763000..16763024 (25 bp)
GAGCGCGTGCTCGTACGTCATCGAC
LOC_Os08g27720
Os.12420.1.S1_at--700--4111Chr08:16763065..16763089 (25 bp)
CGCACACCTGCGTCGTGTTCGGCGG
LOC_Os08g27720
Os.12420.1.S1_at--395--891Chr08:16763337..16763361 (25 bp)
AGGCCGGTGACCATGGTGTCATCAG
LOC_Os08g27720
Os.12420.1.S1_at--491--7451Chr08:16763352..16763376 (25 bp)
GTGTCATCAGCTCATCCAGGTCGCA
LOC_Os08g27720
Os.12420.1.S1_at--1011--9591Chr08:16763363..16763387 (25 bp)
TCATCCAGGTCGCAGGTGAACGCTG
LOC_Os08g27720
Os.12420.1.S1_at--677--10271Chr08:16763390..16763414 (25 bp)
TTTGCGCGGGAGGATAGGAATTTTA
LOC_Os08g27720
Os.12420.1.S1_at--560--5831Chr08:16763415..16763439 (25 bp)
GGGAATTTCGTTGCAAAGTTGATGT
LOC_Os08g27720
Os.12420.1.S1_at--848--9811Chr08:16763444..16763468 (25 bp)
TAAAATGGAGGATTAGGTGTGCCGT
LOC_Os08g27720
Os.12420.1.S1_at--207--7471Chr08:16763460..16763484 (25 bp)
GTGTGCCGTGTGAAACTCCTGTAAA
LOC_Os08g27720
Os.12420.1.S1_at--992--2531Chr08:16763473..16763497 (25 bp)
AACTCCTGTAAAATAACCTTATGCG
LOC_Os08g27720
Os.12420.1.S1_at--208--5231Chr08:16763504..16763528 (25 bp)
GAATTTCGTTCAATTTTTGTGTTTG
NONE
Target Sequence 
GAGCGCGTGCTCGTACGTCATCGACGGCGAGGNCGTCTTCGGGGACGAGGCCGCGGCGGCGGGCGCGCACACCTGCGTCG
TGTTCGGCGGCGGCGGCGACGGCGTGGCCGCGCGGGCGACGGAGCGCNCCGCGGCGAGGTTCCTGCTGNTGGCGGCGCGG
CCGCACGGCGAGGCCGTGGTGAAGGACGGGCCGTTCGTGATGAACACCCGGGAGGAGGTGGAGCAGGCCAGGGANGACTA
CCGGAACCGCCGCAACGGCTTCGAGATGGCCGCCGGCTGGAGCTCCGACCACGTTGCCACCGCCGCCGCGGCGCACTGAT
GGTCACCGGCGACGGCGAGGCCGGTGACCATGGTGTCATCAGCTCATCCAGGTCGCAGGTGAACGCTGCGTTTGCGCGGG
AGGATAGGAATTTTAGGGAATTTCGTTGCAAAGTTGATGTAANATAAAATGGAGGATTAGGTGTGCCGTGTGAAACTCCT
GTAAAATAACCTTATGCGAATATTGAATTTCGTTCAATTTTTGTGTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12420.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis