Browse Element(s) Details


Os.12484.1.S1_at

Description gb:CR281424
DB_XREF= gi:44667990
DB_XREF=CR281424
CLONE=y729c12p3
TID=Os.12484.1
CNT=5
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.12484 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g456705/11myb family transcription factor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g45620Os.55484.1.S1_at11/112+27745597..27746564uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os02g45620Os.55484.1.S1_x_at11/112+27745597..27746564uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os02g45620OsAffx.24740.1.S1_x_at3/112+27745597..27746564uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os02g45630OsAffx.2969.1.S1_at11/112+27749030..27752902hypothetical protein
LOC_Os02g45630OsAffx.17955.1.S1_at1/112+27749030..27752902hypothetical protein
LOC_Os02g45630Os.54455.1.S1_at1/112+27749030..27752902hypothetical protein
LOC_Os02g45640OsAffx.23890.2.S1_x_at5/112+27754280..27756131hypothetical protein
LOC_Os02g45640OsAffx.23890.2.S1_at5/112+27754280..27756131hypothetical protein
LOC_Os02g45640OsAffx.23890.4.S1_x_at1/112+27754280..27756131hypothetical protein
LOC_Os02g45640OsAffx.22005.1.S1_x_at1/112+27754280..27756131hypothetical protein
LOC_Os02g45640OsAffx.22811.1.S1_at1/112+27754280..27756131hypothetical protein
LOC_Os02g45650Os.13475.1.S1_at10/112+27758787..27764901Peptidase family M48 containing protein, expressed
LOC_Os02g45660Os.49474.1.S1_at8/112+27767582..277696412-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplast precursor, putative, expressed
LOC_Os02g45670OsAffx.2971.1.S1_at11/112+27770790..27775529myb family transcription factor, putative, expressed
LOC_Os02g45670Os.12484.1.S1_at5/112+27770790..27775529myb family transcription factor, putative, expressed
LOC_Os02g45680NANA2+27778351..27786356retrotransposon protein, putative, unclassified
LOC_Os02g45690Os.6297.1.S1_at11/112+27792179..27797855Mechanosensitive ion channel family protein, expressed
LOC_Os02g45690OsAffx.22034.1.S1_at1/112+27792179..27797855Mechanosensitive ion channel family protein, expressed
LOC_Os02g45700Os.6297.2.S1_at10/112+27797544..27799762fringe protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12484.1.S1_at--272--4931NONE
GCTTGCACACGTGAGATCTGTCTAT
NONE
Os.12484.1.S1_at--861--8671Chr02:27771055..27771079 (25 bp)
TGTGTATATATGTTAGCCCTGAAGC
LOC_Os02g45670
Os.12484.1.S1_at--355--8991Chr02:27771036..27771060 (25 bp)
TGAAGCGTGTAGTTTTCCTCACCCA
LOC_Os02g45670
Os.12484.1.S1_at--1035--8391Chr02:27770995..27771019 (25 bp)
GGCGCGCAAATCTTTCTCTAGTTAA
LOC_Os02g45670
Os.12484.1.S1_at--642--8571Chr02:27770922..27770946 (25 bp)
TGGATTGCTGGTTGCTCCCTTTTTC
LOC_Os02g45670
Os.12484.1.S1_at--353--4291Chr02:27770898..27770922 (25 bp)
CCTCCATTGAGTTCAGCTGGTGATG
LOC_Os02g45670
Os.12484.1.S1_at--395--2671Chr02:27770732..27770756 (25 bp)
AAGCGGCTTAGCACTATGTAAATCA
NONE
Os.12484.1.S1_at--959--8671Chr02:27770707..27770731 (25 bp)
TGTGTTATGCACCATGTATCATGTA
NONE
Os.12484.1.S1_at--310--6371Chr02:27770681..27770705 (25 bp)
GATCCTTGGAAGTTCTGGATGCAAA
NONE
Os.12484.1.S1_at--980--7331Chr02:27770648..27770672 (25 bp)
GTGCACTTGCCATGTAAGTTCTCTA
NONE
Os.12484.1.S1_at--178--4971NONE
GCATAACTGCAGTCGGTATAGGAGT
NONE
Target Sequence 
GCTTGCACACGTGAGATCTGTCTATAGCGGTNTAATAGCCTAATTGTGTATATATGTTAGCCCTGAAGCGTGTAGTTTTC
CTCACCCAATACNTCGGTCGCCTNGGCGCGCAAATCTTTCTCTAGTTAAAAGGCTGTTCTTAGTAATGGGAAATGGAAAG
GAAATTTTGAGTGATGCTGGATTGCTGGTTGCTCCCTTTTTCCTCCATTGAGTTCAGCTGGTGATGGCATTCTCGTTTCT
GTCATCTGGCAGAGAAGGCACTACTGCCCCAAGTGACCCATGGCATAGCCAGAAACAGAATGCTCCATCAGTCCATCTGA
TGAGATATGTGTGAAGAGGTTTCAGCTGAGCTGATTATAGTGCTGTAAAGCGGCTTAGCACTATGTAAATCATGTGTTAT
GCACCATGTATCATGTATGATCCTTGGAAGTTCTGGATGCAAAAGTGAGTTGTGCACTTGCCATGTAAGTTCTCTATGAT
GAAAAAGGCCAAGNGTACTATTGTNTATGTATATCATTTCAGTTTTTGCATAACTGCAGTCGGTATAGGAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12484.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis