Browse Element(s) Details


Os.12520.1.S1_a_at

Description gb:AF198626.1
DB_XREF= gi:6525008
TID=Os.12520.1
CNT=23
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.12520 (NCBI UniGene Cluster)
DEF=Oryza sativa copper chaperone homolog CCH mRNA, complete cds.
PROD=copper chaperone homolog CCH
FL= gb:AF198626.1 gb:AK121599.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3281411/11heavy metal-associated domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g32750Os.9390.1.S1_at11/112+19445712..19447713Glycosyltransferase 5, putative, expressed
LOC_Os02g32760Os.50384.1.S1_at10/112+19449303..1945248260S acidic ribosomal protein P2A, putative, expressed
LOC_Os02g32770OsAffx.24544.1.S1_at11/112+19453356..19457493Cytochrome P450 family protein, expressed
LOC_Os02g32780Os.23687.1.A1_at11/112+19460445..19463482pentatricopeptide, putative, expressed
LOC_Os02g32790OsAffx.24545.1.S1_at11/112+19463754..19464644hypothetical protein
LOC_Os02g32814Os.12520.1.S1_a_at11/112+19466361..19480380heavy metal-associated domain containing protein, expressed
LOC_Os02g32814OsAffx.12334.2.S1_at11/112+19466361..19480380heavy metal-associated domain containing protein, expressed
LOC_Os02g32814OsAffx.16759.1.A1_at3/112+19466361..19480380heavy metal-associated domain containing protein, expressed
LOC_Os02g32814Os.55390.1.S1_x_at1/112+19466361..19480380heavy metal-associated domain containing protein, expressed
LOC_Os02g32814OsAffx.28943.1.A1_at1/112+19466361..19480380heavy metal-associated domain containing protein, expressed
LOC_Os02g32814OsAffx.22659.1.S1_x_at1/112+19466361..19480380heavy metal-associated domain containing protein, expressed
LOC_Os02g32814Os.9332.2.S1_at1/112+19466361..19480380heavy metal-associated domain containing protein, expressed
LOC_Os02g32814OsAffx.28971.1.S1_at1/112+19466361..19480380heavy metal-associated domain containing protein, expressed
LOC_Os02g32840Os.15931.1.S1_x_at11/112+19482320..19483065AN1-like Zinc finger family protein, expressed
LOC_Os02g32840Os.15931.1.S1_at11/112+19482320..19483065AN1-like Zinc finger family protein, expressed
LOC_Os02g32850Os.8250.1.S1_at4/112+19497632..19498475hypothetical protein
LOC_Os02g32860Os.54236.1.S1_at11/112+19503960..19509067WGR domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000302biological_processresponse to reactive oxygen species
GO:0006827biological_processhigh affinity iron ion transport
GO:0006878biological_processcopper ion homeostasis
GO:0007568biological_processaging
GO:0016021cellular_componentintegral to membrane
GO:0005215molecular_functiontransporter activity
GO:0016531molecular_functioncopper chaperone activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12520.1.S1_a_at--335--10831Chr02:19467241..19467265 (25 bp)
TTGTCCTCAAGGTCGGTATGTCATG
LOC_Os02g32814
Os.12520.1.S1_a_at--413--5371Chr02:19466803..19466827 (25 bp)
GAAGACGTTTTCCAGACGGTCTCAA
LOC_Os02g32814
Os.12520.1.S1_a_at--446--5411Chr02:19466743..19466767 (25 bp)
GAAGCCGCTTCGGATTCTGCAGCTG
LOC_Os02g32814
Os.12520.1.S1_a_at--264--2951Chr02:19466572..19466596 (25 bp)
AAGGCTGATGCTTGATGATCACACA
LOC_Os02g32814
Os.12520.1.S1_a_at--237--9771Chr02:19466547..19466571 (25 bp)
TAATGCTTGCATTGACATCTGGAAA
LOC_Os02g32814
Os.12520.1.S1_a_at--714--4631Chr02:19466511..19466535 (25 bp)
GCGATTGATTTACTCTCTTTGCATT
LOC_Os02g32814
Os.12520.1.S1_a_at--415--2011Chr02:19466500..19466524 (25 bp)
ACTCTCTTTGCATTTAGCCTCTAGT
LOC_Os02g32814
Os.12520.1.S1_a_at--255--6111Chr02:19466468..19466492 (25 bp)
GAGTGCAGTCTTAGCTTGTGTGATC
LOC_Os02g32814
Os.12520.1.S1_a_at--482--3111Chr02:19466424..19466448 (25 bp)
AATATGGTTATCTGTTGCCGGCCAG
LOC_Os02g32814
Os.12520.1.S1_a_at--73--4491Chr02:19466408..19466432 (25 bp)
GCCGGCCAGTGTAGCAGTTGAAATC
LOC_Os02g32814
Os.12520.1.S1_a_at--449--3031Chr02:19466370..19466394 (25 bp)
AATCCAGTCCGATCCGCATGGTTTC
LOC_Os02g32814
Target Sequence 
TTGTCCTCAAGGTCGGTATGTCATGCCAAGGTTGTGCTGGAGCCGTAAGGAGAGTTCTCACAAAAATGGAAGGCGTGGAG
ACCTTTGACATAGACATGGAGCAGCAGAAGGTGACGGTGAAGGGCAATGTCAAGCCAGAAGACGTTTTCCAGACGGTCTC
AAAGACAGGGAAGAAGACCTCCTTCTGGGAGGCTGCAGAAGCCGCTTCGGATTCTGCAGCTGCAGCTGNTCCTGCTCCTG
CTCCGGCAACAGCAGAAGCTGAAGCTGAAGCTGAAGCTGCTCCACCCACCACCACCGCGGCAGAAGCACCTGCCATCGCT
GCTGCTGCTGCTCCTCCTGCTCCTGCTGCTCCAGAAGCAGCTCCGGCCAAGGCTGATGCTTGATGATCACACATAATGCT
TGCATTGACATCTGGAAATTGAACTCCAAGCGATTGATTTACTCTCTTTGCATTTAGCCTCTAGTAAACGGGGAGTGCAG
TCTTAGCTTGTGTGATCTGCATCATAGCAGTGTTGCAATATGGTTATCTGTTGCCGGCCAGTGTAGCAGTTGAAATCCGA
ATTATGAATAAATCCAGTCCGATCCGCATGGTTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12520.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis