Browse Element(s) Details


Os.12549.1.S1_s_at

Description gb:CB629063
DB_XREF= gi:29624052
DB_XREF=OSIIEb05A09.f
CLONE=OSIIEb05A09
TID=Os.12549.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.12549 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0174011/11Protein kinase domain containing protein, expressed
LOC_Os12g0174011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g01670OsAffx.18626.1.S1_at11/1111+371081..372297hypothetical protein
LOC_Os11g01670OsAffx.15580.1.S1_at1/1111+371081..372297hypothetical protein
LOC_Os11g01690NANA11+375049..376541hypothetical protein
LOC_Os11g01700NANA11+377352..381272retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g01710OsAffx.22892.1.S1_at1/1111+382820..384480retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g01720NANA11+384860..386233expressed protein
LOC_Os11g01730Os.56166.1.S1_at2/1111+391254..395763laccase, putative
LOC_Os11g01740Os.12549.1.S1_s_at11/1111+396425..400924Protein kinase domain containing protein, expressed
LOC_Os11g01740Os.6829.1.S1_at11/1111+396425..400924Protein kinase domain containing protein, expressed
LOC_Os11g01740Os.12549.1.S1_at8/1111+396425..400924Protein kinase domain containing protein, expressed
LOC_Os11g01740OsAffx.31542.1.S1_x_at8/1111+396425..400924Protein kinase domain containing protein, expressed
LOC_Os11g01750OsAffx.30769.1.S1_at11/1111+401578..404374hypothetical protein
LOC_Os11g01760NANA11+407138..407431hypothetical protein
LOC_Os11g01770OsAffx.18628.1.S1_x_at11/1111+410080..410319hypothetical protein
LOC_Os11g01770OsAffx.29825.1.S1_x_at1/1111+410080..410319hypothetical protein
LOC_Os11g01770OsAffx.29825.1.S1_at1/1111+410080..410319hypothetical protein
LOC_Os11g01780Os.46305.1.S1_at9/1111+416626..420215Leucine Rich Repeat family protein, expressed
LOC_Os11g01790Os.6814.2.S1_s_at11/1111+421278..424472protein phosphatase 2c, putative, expressed
LOC_Os11g01790Os.47425.1.A1_s_at11/1111+421278..424472protein phosphatase 2c, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12549.1.S1_s_at--831--5072Chr12:442217..442241 (25 bp)
GCACCAAGCAAGCAATCTCCAAAGT
LOC_Os12g01740
Os.12549.1.S1_s_at--763--4372Chr12:442199..442223 (25 bp)
CCAAAGTGCAAGCTTTCTCTTCTTC
LOC_Os12g01740
Os.12549.1.S1_s_at--356--9152Chr12:442176..442197 (22 bp)
TGCGTCTGGATCTCGCTCAGGTTTC
LOC_Os12g01740
Os.12549.1.S1_s_at--138--9472Chr12:442033..442057 (25 bp)
TCTGGATTCAGGTCGCTCTTCAGCA
LOC_Os12g01740
Os.12549.1.S1_s_at--935--9552Chr12:442017..442041 (25 bp)
TCTTCAGCATTCACTACCGTATTCA
LOC_Os12g01740
Os.12549.1.S1_s_at--871--3712Chr12:442004..442028 (25 bp)
CTACCGTATTCACTTCTTGAAGGCC
LOC_Os12g01740
Os.12549.1.S1_s_at--1040--8992Chr12:441987..442011 (25 bp)
TGAAGGCCAATTTCTGGTTCCTCAC
LOC_Os12g01740
Os.12549.1.S1_s_at--391--5512Chr12:441250..441274 (25 bp)
GAACAATTGTTTTTGGCCTGAAACT
LOC_Os12g01740
Os.12549.1.S1_s_at--660--9872Chr12:441238..441262 (25 bp)
TTGGCCTGAAACTTTGGGTTGTAAT
LOC_Os12g01740
Os.12549.1.S1_s_at--98--9752Chr12:441217..441241 (25 bp)
TAATTGGGATATCTGTTGGAGCATC
LOC_Os12g01740
Os.12549.1.S1_s_at--251--8072Chr12:441200..441224 (25 bp)
GGAGCATCCCTACTTGGTGTTCTTC
LOC_Os12g01740
Target Sequence 
GCACCAAGCAAGCAATCTCCAAAGTGCAAGCTTTCTCTTCTTCCTGCGTCTGGATCTCGCTCAGGTTTCTCCTCTGCCTG
CCACTCCCCATGGCTCTGGATTCAGGTCGCTCTTCAGCATTCACTACCGTATTCACTTCTTGAAGGCCAATTTCTGGTTC
CTCACCAAAGGTACTTGATGATCCGAAGATGTCATCAAACTCCACTCTGACAGATTCTCTTCATGAGAGAACAATTGTTT
TTGGCCTGAAACTTTGGGTTGTAATTGGGATATCTGTTGGAGCATCCCTACTTGGTGTTCTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12549.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis