Browse Element(s) Details


Os.12682.1.S1_at

Description gb:AK108280.1
DB_XREF= gi:32993489
TID=Os.12682.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.12682 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-141-C12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-141-C12, full insert sequence.
FL= gb:AK108280.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3746011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g37410Os.26665.1.S1_x_at11/115+21803108..21813723HhH-GPD superfamily base excision DNA repair protein, expressed
LOC_Os05g37410OsAffx.14993.1.S1_x_at10/115+21803108..21813723HhH-GPD superfamily base excision DNA repair protein, expressed
LOC_Os05g37410Os.53059.1.S1_x_at7/115+21803108..21813723HhH-GPD superfamily base excision DNA repair protein, expressed
LOC_Os05g37410OsAffx.14993.1.S1_at4/115+21803108..21813723HhH-GPD superfamily base excision DNA repair protein, expressed
LOC_Os05g37420OsAffx.4545.1.S1_at11/115+21815586..21816504expressed protein
LOC_Os05g37434Os.18844.1.S1_at11/115+21820047..21828143Arginine-tRNA-protein transferase, C terminus containing protein, expressed
LOC_Os05g37434OsAffx.27209.1.S1_at11/115+21820047..21828143Arginine-tRNA-protein transferase, C terminus containing protein, expressed
LOC_Os05g37450Os.54080.1.S1_at11/115+21831690..21834195Starch binding domain containing protein, expressed
LOC_Os05g37460Os.12682.1.S1_at11/115+21836751..21837732expressed protein
LOC_Os05g37470Os.12475.1.S1_s_at11/115+21843682..21848856AUX1-like permease, putative, expressed
LOC_Os05g37470OsAffx.7026.1.S1_x_at2/115+21843682..21848856AUX1-like permease, putative, expressed
LOC_Os05g37480OsAffx.14994.1.S1_at11/115+21851282..21853570hypothetical protein
LOC_Os05g37490NANA5+21855832..21856146hypothetical protein
LOC_Os05g37500Os.12591.1.S1_at11/115+21859888..21876601expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12682.1.S1_at--979--9451Chr05:21837144..21837168 (25 bp)
TCGGCCGATCCATTGTTCAGCACTC
LOC_Os05g37460
Os.12682.1.S1_at--715--4591Chr05:21837042..21837066 (25 bp)
GCGAAGAGAGTGAACCGTCAGCGTA
LOC_Os05g37460
Os.12682.1.S1_at--660--6491Chr05:21837016..21837040 (25 bp)
GATAGCGGTGATCTCTGGCTCTCAA
LOC_Os05g37460
Os.12682.1.S1_at--968--3771Chr05:21837004..21837028 (25 bp)
CTCTGGCTCTCAATATGCATATCTA
LOC_Os05g37460
Os.12682.1.S1_at--400--231Chr05:21836901..21836925 (25 bp)
ATATTATTGACTGCTACCTGAGAAT
LOC_Os05g37460
Os.12682.1.S1_at--844--2811Chr05:21836876..21836900 (25 bp)
AAGTTCAAGGTTTTGCCGTGTGGCT
LOC_Os05g37460
Os.12682.1.S1_at--848--4491Chr05:21836862..21836886 (25 bp)
GCCGTGTGGCTAGTTCTTTTACATT
LOC_Os05g37460
Os.12682.1.S1_at--525--5151Chr05:21836826..21836850 (25 bp)
GCAACAGCATAATTCGGTTGGTGTT
LOC_Os05g37460
Os.12682.1.S1_at--382--6631Chr05:21836810..21836834 (25 bp)
GTTGGTGTTTACTTGTTTCATCCTG
LOC_Os05g37460
Os.12682.1.S1_at--3--5351Chr05:21836782..21836806 (25 bp)
GAAGTTACTGGCTTGGATCATCGGT
LOC_Os05g37460
Os.12682.1.S1_at--706--7931Chr05:21836768..21836792 (25 bp)
GGATCATCGGTGCTGCGAAAAATTT
LOC_Os05g37460
Target Sequence 
TCGGCCGATCCATTGTTCAGCACTCCCGCTCCGTCACCGACGCCGAGGTCGTCGACTACGACAGCCGCCCCAACTCCAAG
CCCCCACCGCAGCCGAAGACGAGCGAAGAGAGTGAACCGTCAGCGTANGATAGCGGTGATCTCTGGCTCTCAATATGCAT
ATCTATTGTANGATTTTATCTACTCAAGTAGTAGTAATTGTGAATTTTTAGTTTTTGTTTTCTTCTCTTGGTTAATTATA
TGTATATTATTGACTGCTACCTGAGAATAAGTTCAAGGTTTTGCCGTGTGGCTAGTTCTTTTACATTATGGATTAGTTGC
AACAGCATAATTCGGTTGGTGTTTACTTGTTTCATCCTGTATGAAGTTACTGGCTTGGATCATCGGTGCTGCGAAAAATT
T

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12682.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis