Browse Element(s) Details


Os.12804.1.S1_at

Description gb:AU096337
DB_XREF= gi:8859019
DB_XREF=AU096337
CLONE=S13519
TID=Os.12804.1
CNT=4
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.12804 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative receptor protein kinase (OSJNBa0076F20.2), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3719011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g37160Os.46872.1.S1_at11/1110+19551715..19553585transposon protein, putative, unclassified, expressed
LOC_Os10g37160OsAffx.30695.2.S1_x_at2/1110+19551715..19553585transposon protein, putative, unclassified, expressed
LOC_Os10g37160OsAffx.30725.2.S1_x_at2/1110+19551715..19553585transposon protein, putative, unclassified, expressed
LOC_Os10g37160OsAffx.30695.3.S1_x_at1/1110+19551715..19553585transposon protein, putative, unclassified, expressed
LOC_Os10g37160OsAffx.30695.4.S1_x_at1/1110+19551715..19553585transposon protein, putative, unclassified, expressed
LOC_Os10g37160Os.46643.1.S1_x_at1/1110+19551715..19553585transposon protein, putative, unclassified, expressed
LOC_Os10g37170OsAffx.25579.1.S1_x_at11/1110+19554594..19558613retrotransposon protein, putative, unclassified
LOC_Os10g37170OsAffx.25579.2.S1_x_at7/1110+19554594..19558613retrotransposon protein, putative, unclassified
LOC_Os10g37180Os.8488.1.S1_s_at10/1110+19565050..19567162Glycine cleavage system H protein, mitochondrial precursor, putative, expressed
LOC_Os10g37190Os.12804.1.S1_at11/1110+19569421..19571239Protein kinase domain containing protein, expressed
LOC_Os10g37210Os.15767.2.S1_x_at10/1110+19578774..19584201Electron transfer flavoprotein-ubiquinone oxidoreductase,mitochondrial precursor, putative, expressed
LOC_Os10g37220OsAffx.30698.1.S1_at11/1110+19584507..19585181hypothetical protein
LOC_Os10g37230Os.12700.1.S1_at11/1110+19586024..19587289expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12804.1.S1_at--901--9231Chr10:19569945..19569969 (25 bp)
TCCATCTCGGCCGTCGCGAGGAGAT
LOC_Os10g37190
Os.12804.1.S1_at--490--1611Chr10:19569905..19569929 (25 bp)
AGCTGTGATTCACACGAGGCGTGTC
LOC_Os10g37190
Os.12804.1.S1_at--506--7451Chr10:19569885..19569909 (25 bp)
GTGTCGAATCCTAGGCGCTTAGATC
LOC_Os10g37190
Os.12804.1.S1_at--178--7391Chr10:19569847..19569871 (25 bp)
GTGAGCTGTAACTTGCGATGACGAC
LOC_Os10g37190
Os.12804.1.S1_at--1140--1852Chr04:20770529..20770557 (24 bp)
ACGACGATGACGTCATCTGGCGTCA
NONE
Os.12804.1.S1_at--609--491Chr10:19569813..19569837 (25 bp)
ATCTGGCGTCACCTGCACACGTGGA
LOC_Os10g37190
Os.12804.1.S1_at--829--9251Chr10:19569784..19569808 (25 bp)
TCCTACTGGGTGGAGCTTAGAACAA
LOC_Os10g37190
Os.12804.1.S1_at--368--7951Chr10:19569565..19569589 (25 bp)
GGATCGTCCATTTTACGATTCCAAA
LOC_Os10g37190
Os.12804.1.S1_at--288--7891Chr10:19569519..19569543 (25 bp)
TCGTTTGTTCGTGTAAAGTTCACCG
LOC_Os10g37190
Os.12804.1.S1_at--101--2331Chr10:19569505..19569529 (25 bp)
AAAGTTCACCGAGTGCCTCCTGTTT
LOC_Os10g37190
Os.12804.1.S1_at--162--6511Chr10:19569453..19569477 (25 bp)
GATTTCGACCAGAGTTTGAATTCCA
LOC_Os10g37190
Target Sequence 
TCCATCTCGGCCGTCGCGAGGAGATCCGACGNCCACGGGAAGCTGTGATTCACACGAGGCGTGTCGAATCCTAGGCGCTT
AGATCTGGGGGGCTTTTGGTGAGCTGTAACTTGCGATGACGACGATGACGTCATCTGGCGTCACCTGCACACGTGGACCC
CTCCTACTGGGTGGAGCTTAGAACAAAGCGGGGTAGTGGGCGAGCACCNNNAAAAAAAAAGAATCAAAAAAAGGAGAAAA
AAAGTAGTAGTGGTATGATTTGGAAAAGATTTGGNGCATCNAAAAGGTGGGGTTTNTGTGTGCTAATGGNGGAATTTCGA
TCACNTTGTGGTGCNAAAAAAAAATGGCAGCGATTTGGGAGGGTGAGGTGATTATGAAAATGGATCGTCCATTTTACGAT
TCCAAAGAGATTTTGGTTTTTATTCTTTCGTTTGTTCGTGTAAAGTTCACCGAGTGCCTCCTGTTTCTGTTNATATTGTT
GATGATTGATTTAGATTTCGACCAGAGTTTGAATTCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12804.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis