Browse Element(s) Details


Os.12837.1.S1_at

Description gb:AK058858.1
DB_XREF= gi:32968876
TID=Os.12837.1
CNT=21
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12837 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-005-E04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-005-E04, full insert sequence.
FL= gb:AK058858.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5572011/11cytochrome b6f complex subunit, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g55690OsAffx.22940.5.S1_at11/113+31642555..31646748retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g55690OsAffx.22940.1.S1_s_at7/113+31642555..31646748retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g55690OsAffx.22940.5.S1_x_at7/113+31642555..31646748retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g55690Os.35344.3.S1_x_at5/113+31642555..31646748retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g55690Os.35344.18.S1_x_at4/113+31642555..31646748retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g55690OsAffx.22940.2.S1_s_at3/113+31642555..31646748retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g55690Os.38172.1.S1_x_at2/113+31642555..31646748retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g55690Os.43567.1.S1_x_at1/113+31642555..31646748retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g55704OsAffx.13497.1.S1_s_at11/113+31654897..31660831expressed protein
LOC_Os03g55704Os.50619.1.S1_x_at1/113+31654897..31660831expressed protein
LOC_Os03g55704OsAffx.4992.1.S1_at1/113+31654897..31660831expressed protein
LOC_Os03g55704Os.50619.1.S1_at1/113+31654897..31660831expressed protein
LOC_Os03g55704Os.50196.2.S1_x_at1/113+31654897..31660831expressed protein
LOC_Os03g55720Os.12837.1.S1_at11/113+31664100..31664825cytochrome b6f complex subunit, putative, expressed
LOC_Os03g55730Os.11614.1.S1_s_at11/113+31664942..31671202expressed protein
LOC_Os03g55730OsAffx.25725.1.S1_at11/113+31664942..31671202expressed protein
LOC_Os03g55730Os.11519.1.S1_a_at11/113+31664942..31671202expressed protein
LOC_Os03g55730OsAffx.25725.2.S1_s_at11/113+31664942..31671202expressed protein
LOC_Os03g55730Os.11519.2.S1_x_at11/113+31664942..31671202expressed protein
LOC_Os03g55730Os.38505.1.S1_x_at2/113+31664942..31671202expressed protein
LOC_Os03g55734Os.13536.1.S1_at11/113+31671456..31671989prolamin, putative, expressed
LOC_Os03g55734Os.11519.2.S1_x_at1/113+31671456..31671989prolamin, putative, expressed
LOC_Os03g55740NANA3+31674717..31675175prolamin, putative, expressed
LOC_Os03g55750OsAffx.6388.1.S1_x_at11/113+31684561..31686391hypothetical protein
LOC_Os03g55750OsAffx.6388.1.S1_at11/113+31684561..31686391hypothetical protein
LOC_Os03g55760Os.55608.1.S1_at11/113+31688428..31694221myb-like DNA-binding domain, SHAQKYF class family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009496molecular_functionplastoquinol-plastocyanin reductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12837.1.S1_at--555--7991Chr03:31664359..31664383 (25 bp)
GGATGAACGCGTACAGCGGGCTCAA
LOC_Os03g55720
Os.12837.1.S1_at--93--4491Chr03:31664424..31664448 (25 bp)
GCCGACTACTCGTTCGCCAAGGTGG
LOC_Os03g55720
Os.12837.1.S1_at--462--6051Chr03:31664520..31664544 (25 bp)
GAGATATTCAGGATCGCCGTCATCA
LOC_Os03g55720
Os.12837.1.S1_at--763--9591Chr03:31664542..31664566 (25 bp)
TCATGAACGGGCTCGTGCTCGTCGG
LOC_Os03g55720
Os.12837.1.S1_at--776--1131Chr03:31664614..31664638 (25 bp)
AGTCGGAGTAGTGGACCCCGATCGA
LOC_Os03g55720
Os.12837.1.S1_at--358--6391Chr03:31664633..31664657 (25 bp)
GATCGAGCCATAGCAGGCAGGGCCC
LOC_Os03g55720
Os.12837.1.S1_at--1061--3371Chr03:31664661..31664685 (25 bp)
CAGCCATGGCTGGTTGGCCCCGATA
LOC_Os03g55720
Os.12837.1.S1_at--427--211Chr03:31664724..31664748 (25 bp)
ATTTGCTTTCGTTTTGTACCCATGA
LOC_Os03g55720
Os.12837.1.S1_at--872--8991Chr03:31664756..31664780 (25 bp)
TGAATACCCTTGGAACGAAACACGT
LOC_Os03g55720
Os.12837.1.S1_at--707--5531Chr03:31664772..31664796 (25 bp)
GAAACACGTTTTGGAGGCAGAACCT
LOC_Os03g55720
Os.12837.1.S1_at--209--1771Chr03:31664793..31664817 (25 bp)
ACCTGCAAATGCAATTGGTTTTTCA
LOC_Os03g55720
Target Sequence 
GGATGAACGCGTACAGCGGGCTCAAGGCGCTCAACAAGGTGACCCTGCTCGGCGTGCGCAAGACCGCCGACTACTCGTTC
GCCAAGGTGGTGGCCAAGCTGAGCCCCGCCGGCGGGAAGAGCCGCGGCGGCGCGTTCGGGGCGCAGTGCAACGCCGCCGG
TGAGATATTCAGGATCGCCGTCATCATGAACGGGCTCGTGCTCGTCGGCGTCGCCGTCGGCTTCGTGCTGCTCCGGGTGG
AGGCGGCCGTCGAGGAGTCGGAGTAGTGGACCCCGATCGAGCCATAGCAGGCAGGGCCCAGCCAGCCATGGCTGGTTGGC
CCCGATAAGCCGTGATATATAACTGTGATGTATGTTTCGATTAAAATTTGCTTTCGTTTTGTACCCATGACGATTGGTGA
ATACCCTTGGAACGAAACACGTTTTGGAGGCAGAACCTGCAAATGCAATTGGTTTTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12837.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis