Browse Element(s) Details


Os.13960.1.S1_at

Description gb:AK103064.1
DB_XREF= gi:32988273
TID=Os.13960.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.13960 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0458E05.24 (P0458E05.24), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033117N09, full insert sequence.
FL= gb:AK103064.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7356011/11Leucine Rich Repeat family protein, expressed
LOC_Os05g490002/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g73514Os.20353.1.S2_at11/111+42917729..429248505-oxoprolinase, putative, expressed
LOC_Os01g73514Os.20353.1.S1_a_at11/111+42917729..429248505-oxoprolinase, putative, expressed
LOC_Os01g73514Os.20353.1.S3_s_at11/111+42917729..429248505-oxoprolinase, putative, expressed
LOC_Os01g73514OsAffx.21927.1.S1_x_at1/111+42917729..429248505-oxoprolinase, putative, expressed
LOC_Os01g73530Os.28988.1.S1_a_at11/111+42935890..42939281ABC transporter family protein, expressed
LOC_Os01g73530Os.28988.2.S1_x_at11/111+42935890..42939281ABC transporter family protein, expressed
LOC_Os01g73530Os.28988.1.S1_at11/111+42935890..42939281ABC transporter family protein, expressed
LOC_Os01g73540Os.33788.1.S1_at11/111+42940636..42941470YGGT family protein, putative, expressed
LOC_Os01g73550Os.12130.1.S1_at11/111+42941662..42945189mitochondrial processing peptidase alpha subunit 1,mitochondrial precursor, putative, expressed
LOC_Os01g73560Os.13960.2.S1_x_at11/111+42945326..42948552Leucine Rich Repeat family protein, expressed
LOC_Os01g73560Os.13960.2.S1_s_at11/111+42945326..42948552Leucine Rich Repeat family protein, expressed
LOC_Os01g73560Os.13960.1.S1_a_at11/111+42945326..42948552Leucine Rich Repeat family protein, expressed
LOC_Os01g73560Os.13960.1.S1_at11/111+42945326..42948552Leucine Rich Repeat family protein, expressed
LOC_Os01g73570Os.8280.1.S1_x_at11/111+42948667..42951599vacuolar protein sorting 55 family protein, putative, expressed
LOC_Os01g73570Os.8280.1.S1_at11/111+42948667..42951599vacuolar protein sorting 55 family protein, putative, expressed
LOC_Os01g73570Os.8280.2.S1_x_at9/111+42948667..42951599vacuolar protein sorting 55 family protein, putative, expressed
LOC_Os01g73580Os.11387.1.S1_a_at11/111+42953169..42957287Beta-fructofuranosidase, insoluble isoenzyme 4 precursor, putative, expressed
LOC_Os01g73590OsAffx.24031.1.S1_x_at11/111+42962576..42964753Sugar transporter family protein
LOC_Os01g73604OsAffx.2471.2.S1_at11/111+42965704..42971792Sm protein
LOC_Os01g73620Os.15240.1.A1_x_at11/111+42972937..42980919expressed protein
LOC_Os01g73620Os.12693.4.S1_at11/111+42972937..42980919expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0046202biological_processcyanide biosynthesis
GO:0005515molecular_functionprotein binding
GO:0016832molecular_functionaldehyde-lyase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13960.1.S1_at--900--8792Chr05:28024728..28025006 (25 bp)
TGTTGGAACTCCTTATTTTGGCTTT
LOC_Os05g49000
Os.13960.1.S1_at--321--10831Chr01:42945550..42945574 (25 bp)
TTGGCTTTACTTGCAAGCCGAGCTT
LOC_Os01g73560
Os.13960.1.S1_at--255--2671Chr01:42945536..42945560 (25 bp)
AAGCCGAGCTTTTGTATGCACCATC
LOC_Os01g73560
Os.13960.1.S1_at--619--8771Chr01:42945507..42945531 (25 bp)
TGTTTTGTCACTTCAAACGTGCAAA
LOC_Os01g73560
Os.13960.1.S1_at--52--2391Chr01:42945493..42945517 (25 bp)
AAACGTGCAAACTGACCTGTCGGTG
LOC_Os01g73560
Os.13960.1.S1_at--305--1771Chr01:42945479..42945503 (25 bp)
ACCTGTCGGTGCAGCAAGTGTTGAA
LOC_Os01g73560
Os.13960.1.S1_at--144--7651Chr01:42945406..42945430 (25 bp)
GGGAGCTCAATTTCCCTGAACTCAA
LOC_Os01g73560
Os.13960.1.S1_at--795--10291Chr01:42945396..42945420 (25 bp)
TTTCCCTGAACTCAACAGTGTTGTT
LOC_Os01g73560
Os.13960.1.S1_at--10--3471Chr01:42945381..42945405 (25 bp)
CAGTGTTGTTGCTTTTCATCCATTA
LOC_Os01g73560
Os.13960.1.S1_at--650--10531Chr01:42945367..42945391 (25 bp)
TTCATCCATTATTATCCAACTCTGT
LOC_Os01g73560
Os.13960.1.S1_at--900--1372Chr05:28024927..28024951 (25 bp)
AGACGCAACATTTCGTACTAGTTTT
LOC_Os05g49000
Target Sequence 
TGTTGGAACTCCTTATTTTGGCTTTACTTGCAAGCCGAGCTTTTGTATGCACCATCTGCTTGTTTTGTCACTTCAAACGT
GCAAACTGACCTGTCGGTGCAGCAAGTGTTGAAAATTTTGTACAAGTTCAGGTTGGAAGTTTTGTAAAAGTTCAGATGAT
GGGGAGCTCAATTTCCCTGAACTCAACAGTGTTGTTGCTTTTCATCCATTATTATCCAACTCTGTAGTTAAGCAAAGACG
CAACATTTCGTACTAGTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13960.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis