Browse Element(s) Details


Os.14189.1.S1_s_at

Description gb:BI805246
DB_XREF= gi:15852450
DB_XREF=S034D10
CLONE=S034D10
TID=Os.14189.1
CNT=4
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.14189 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein pir:T50502 (A.thaliana) T50502 hypothetical protein T22D6.110 - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3921011/11Agmatine deiminase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g39160Os.24653.1.A1_s_at11/114+23065706..23071398RNA dependent RNA polymerase family protein, expressed
LOC_Os04g39160Os.51949.1.S1_at11/114+23065706..23071398RNA dependent RNA polymerase family protein, expressed
LOC_Os04g39170Os.14783.2.S1_at11/114+23072254..23076090expressed protein
LOC_Os04g39170Os.14783.1.S1_at11/114+23072254..23076090expressed protein
LOC_Os04g39180OsAffx.26385.1.S1_at11/114+23074855..23078904Protein kinase domain containing protein, expressed
LOC_Os04g39190OsAffx.4028.1.S1_at11/114+23086590..23092107cell division protein FtsH, putative, expressed
LOC_Os04g39190OsAffx.4028.1.S1_x_at11/114+23086590..23092107cell division protein FtsH, putative, expressed
LOC_Os04g39190Os.52019.1.A1_at11/114+23086590..23092107cell division protein FtsH, putative, expressed
LOC_Os04g39190Os.15870.1.S1_s_at10/114+23086590..23092107cell division protein FtsH, putative, expressed
LOC_Os04g39200OsAffx.26386.1.S1_at11/114+23092886..23093470hypothetical protein
LOC_Os04g39210Os.14189.1.S1_s_at11/114+23096161..23099742Agmatine deiminase, putative, expressed
LOC_Os04g39210OsAffx.26387.1.S1_at11/114+23096161..23099742Agmatine deiminase, putative, expressed
LOC_Os04g39220Os.19040.1.S1_at10/114+23099755..23107680expressed protein
LOC_Os04g39230Os.18755.1.S1_at11/114+23110763..23111945expressed protein
LOC_Os04g39240Os.22379.1.S1_at10/114+23112033..23117844expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006596biological_processpolyamine biosynthesis
GO:0047632molecular_functionagmatine deiminase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14189.1.S1_s_at--127--7631Chr04:23099285..23099309 (25 bp)
GGGAAACATACACTGCATCACGCAG
LOC_Os04g39210
Os.14189.1.S1_s_at--1025--4471Chr04:23099315..23099339 (25 bp)
GCCTGTACGCCCGTCGTAGATGATA
LOC_Os04g39210
Os.14189.1.S1_s_at--1066--4531Chr04:23099323..23099347 (25 bp)
GCCCGTCGTAGATGATACTGCGTAT
LOC_Os04g39210
Os.14189.1.S1_s_at--196--5671Chr04:23099365..23099389 (25 bp)
GACATGGGACTAGTCCAGATTCGTA
LOC_Os04g39210
Os.14189.1.S1_s_at--509--9391Chr04:23099385..23099409 (25 bp)
TCGTAGTACTATATGTCCAGGGAGT
LOC_Os04g39210
Os.14189.1.S1_s_at--520--6231Chr04:23099411..23099435 (25 bp)
GATGGCACTATAGCAGCCATGCCCT
LOC_Os04g39210
Os.14189.1.S1_s_at--153--4431Chr04:23099426..23099450 (25 bp)
GCCATGCCCTATCGTGAATTCGTGA
LOC_Os04g39210
Os.14189.1.S1_s_at--49--191Chr04:23099462..23099486 (25 bp)
ATTTGCTACCCAAAATGGCGACCCG
LOC_Os04g39210
Os.14189.1.S1_s_at--783--6051Chr04:23099553..23099577 (25 bp)
GAGTTGATAGAATAAGGCCGCAGAC
LOC_Os04g39210
Os.14189.1.S1_s_at--864--7431Chr04:23099655..23099679 (25 bp)
GTGTAAGCACGTTGGAAACTGCCTT
LOC_Os04g39210
Os.14189.1.S1_s_at--650--8151Chr04:23099668..23099692 (25 bp)
GGAAACTGCCTTATGGCCTTTGCCA
LOC_Os04g39210
Target Sequence 
GGGAAACATACACTGCATCACGCAGCANCAGCCTGTACGCCCGTCGTAGATGATACTGCGTATATAGTATTATGAATTTG
GACATGGGACTAGTCCAGATTCGTAGTACTATATGTCCAGGGAGTAGATGGCACTATAGCAGCCATGCCCTATCGTGAAT
TCGTGATAAGCTACATCATTTGCTACCCAAAATGGCGACCCGATCATACACCNTTGATTACCCAAAACCAAATGAATGAA
TTGATAGATTACCCAAAACCAAATGAATGAGTTGATAGAATAAGGCCGCAGACNAACANTTGTGATTTGTGAGCTTGTGT
GTAGGGGATGTGGTTGCACCANGCGTGATGGATATGGTTGTAAGTTGCANGTAGTGTAAGCACGTTGGAAACTGCCTTAT
GGCCTTTGCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14189.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis