Browse Element(s) Details


Os.14280.1.S1_x_at

Description gb:AK067431.1
DB_XREF= gi:32977449
TID=Os.14280.1
CNT=33
FEA=FLmRNA
TIER=FL+Stack
STK=10
UG=Os.14280 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative DEAD BOX RNA helicase (B1156H12.18), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013107H03, full insert sequence.
FL= gb:AK071356.1 gb:AK122050.1 gb:AK104852.1 gb:AK067431.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3689011/11Spliceosome RNA helicase Bat1, putative, expressed
LOC_Os01g369208/11Spliceosome RNA helicase Bat1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g36850Os.31233.1.S1_at10/111+20845528..20848349transposon protein, putative, Pong sub-class, expressed
LOC_Os01g36860Os.11734.1.S1_a_at11/111+20849294..20855064RNA helicase DB10, putative, expressed
LOC_Os01g36860Os.11734.3.S1_x_at5/111+20849294..20855064RNA helicase DB10, putative, expressed
LOC_Os01g36870Os.12434.1.S1_at11/111+20861935..20865792phox domain-containing protein, putative, expressed
LOC_Os01g36880OsAffx.2170.1.S1_s_at10/111+20866438..20867287hypothetical protein
LOC_Os01g36890Os.14280.1.S1_a_at11/111+20867676..20873945Spliceosome RNA helicase Bat1, putative, expressed
LOC_Os01g36890Os.14280.3.S1_x_at11/111+20867676..20873945Spliceosome RNA helicase Bat1, putative, expressed
LOC_Os01g36890Os.14280.3.S1_at11/111+20867676..20873945Spliceosome RNA helicase Bat1, putative, expressed
LOC_Os01g36890Os.14280.1.S1_at11/111+20867676..20873945Spliceosome RNA helicase Bat1, putative, expressed
LOC_Os01g36890Os.14280.1.S1_x_at11/111+20867676..20873945Spliceosome RNA helicase Bat1, putative, expressed
LOC_Os01g36890Os.50777.1.S1_at4/111+20867676..20873945Spliceosome RNA helicase Bat1, putative, expressed
LOC_Os01g36890Os.14280.2.S1_x_at4/111+20867676..20873945Spliceosome RNA helicase Bat1, putative, expressed
LOC_Os01g36900OsAffx.11357.1.S1_at11/111+20876458..20885520hypothetical protein
LOC_Os01g36900OsAffx.22442.1.S1_x_at3/111+20876458..20885520hypothetical protein
LOC_Os01g36900Os.6502.1.A1_at1/111+20876458..20885520hypothetical protein
LOC_Os01g36900Os.6502.1.A1_x_at1/111+20876458..20885520hypothetical protein
LOC_Os01g36900OsAffx.3521.1.S1_at1/111+20876458..20885520hypothetical protein
LOC_Os01g36900OsAffx.3521.1.S1_x_at1/111+20876458..20885520hypothetical protein
LOC_Os01g36900OsAffx.1331.1.S1_at1/111+20876458..20885520hypothetical protein
LOC_Os01g36910Os.35344.3.S1_x_at10/111+20892716..20896877Transposable element protein, putative, MuDR
LOC_Os01g36910Os.35344.18.S1_x_at8/111+20892716..20896877Transposable element protein, putative, MuDR
LOC_Os01g36910OsAffx.22940.5.S1_x_at3/111+20892716..20896877Transposable element protein, putative, MuDR
LOC_Os01g36920Os.14280.2.S1_x_at11/111+20897826..20903053Spliceosome RNA helicase Bat1, putative, expressed
LOC_Os01g36920Os.14280.1.S1_a_at11/111+20897826..20903053Spliceosome RNA helicase Bat1, putative, expressed
LOC_Os01g36920Os.14280.2.S1_at9/111+20897826..20903053Spliceosome RNA helicase Bat1, putative, expressed
LOC_Os01g36920Os.50777.1.S1_at9/111+20897826..20903053Spliceosome RNA helicase Bat1, putative, expressed
LOC_Os01g36920Os.14280.1.S1_x_at8/111+20897826..20903053Spliceosome RNA helicase Bat1, putative, expressed
LOC_Os01g36920Os.14280.1.S1_at6/111+20897826..20903053Spliceosome RNA helicase Bat1, putative, expressed
LOC_Os01g36920Os.14280.3.S1_x_at5/111+20897826..20903053Spliceosome RNA helicase Bat1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008026molecular_functionATP-dependent helicase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14280.1.S1_x_at--72--9372Chr01:20902548..20902572 (25 bp)
TCGAGGTTGACATAAAGGAGCTTCC
LOC_Os01g36920
Os.14280.1.S1_x_at--624--972Chr01:20902563..20902587 (25 bp)
AGGAGCTTCCTGAGCAGATTGATAC
LOC_Os01g36920
Os.14280.1.S1_x_at--60--8912Chr01:20902573..20902597 (25 bp)
TGAGCAGATTGATACTTCGACATAT
LOC_Os01g36920
Os.14280.1.S1_x_at--167--2532Chr01:20902805..20902829 (25 bp)
AACTTAGTGTGAGAAATGCTGCCCT
LOC_Os01g36920
Os.14280.1.S1_x_at--191--5591Chr01:20873652..20873676 (25 bp)
GAAATGCTGCCCTATCTATACTTAG
LOC_Os01g36890
Os.14280.1.S1_x_at--268--9111Chr01:20873656..20873680 (25 bp)
TGCTGCCCTATCTATACTTAGACAG
LOC_Os01g36890
Os.14280.1.S1_x_at--807--4531Chr01:20873660..20873684 (25 bp)
GCCCTATCTATACTTAGACAGCAGT
LOC_Os01g36890
Os.14280.1.S1_x_at--1080--8672Chr01:20902973..20902997 (25 bp)
TGTGTTAATTTTGCTACTCCGCAGA
LOC_Os01g36920
Os.14280.1.S1_x_at--126--6772Chr01:20902976..20903000 (25 bp)
GTTAATTTTGCTACTCCGCAGATGC
LOC_Os01g36920
Os.14280.1.S1_x_at--698--3132Chr01:20902979..20903003 (25 bp)
AATTTTGCTACTCCGCAGATGCTAA
LOC_Os01g36920
Os.14280.1.S1_x_at--480--10272Chr01:20902982..20903006 (25 bp)
TTTGCTACTCCGCAGATGCTAACGT
LOC_Os01g36920
Target Sequence 
TCGAGGTTGACATAAAGGAGCTTCCTGAGCAGATTGATACTTCGACATATATGCCTTCNTAAAGATCCGGGTGGANTGCT
TAAANGCTTACATTCGAACCGGAAACNNGAGTATCTCCTTGAGATACGNCATATTAAGAATCTATCGGATAACTANAAAC
TTAGTGTGAGAAATGCTGCCCTATCTATACTTAGACAGCAGTTTAGNTCTGCTGCTAAGTGCTGAATGNCCCGTAATAAT
ACTTGAAANGATGTATCTGGGCAATTGGGCATGNACGTATTTGAATTGCNGTCGTTCATNGTANTTCCGAGAATTTTATT
AGGATNTGTTTGTGTTAATTTTGCTACTCCGCAGATGCTAACGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14280.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis