Browse Element(s) Details


Os.14444.1.S1_at

Description gb:AK105926.1
DB_XREF= gi:32991135
TID=Os.14444.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.14444 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative glutathione S-transferase (OSJNBb0038A07.4), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-205-A09, full insert sequence.
FL= gb:AK105926.1 gb:AK067361.1 gb:AK104213.1 gb:AK098972.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3870011/11glutathione S-transferase GSTU6, putative, expressed
LOC_Os09g389501/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g160801/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g38600Os.40000.1.S1_at11/1110+20265385..20266432glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38600Os.40000.1.S1_x_at11/1110+20265385..20266432glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38610Os.8868.1.S1_at11/1110+20267390..20268697glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38610Os.40000.1.S1_x_at3/1110+20267390..20268697glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38630Os.7732.1.S1_at10/1110+20270215..20272232glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38630OsAffx.5632.1.S1_x_at2/1110+20270215..20272232glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38630OsAffx.5632.1.S1_at2/1110+20270215..20272232glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38640NANA10+20274076..20274906glutathione S-transferase GSTU6, putative
LOC_Os10g38660NANA10+20277801..20278597glutathione S-transferase GSTU6, putative
LOC_Os10g38664NANA10+20279232..20279933expressed protein
LOC_Os10g38670Os.21842.1.S1_at11/1110+20280396..20281652glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38680OsAffx.27523.1.S1_x_at11/1110+20282048..20283534hypothetical protein
LOC_Os10g38680OsAffx.27523.3.S1_x_at1/1110+20282048..20283534hypothetical protein
LOC_Os10g38690OsAffx.18569.1.S1_x_at11/1110+20287129..20287900glutathione S-transferase GSTU6, putative
LOC_Os10g38690OsAffx.18569.1.S1_at11/1110+20287129..20287900glutathione S-transferase GSTU6, putative
LOC_Os10g38690OsAffx.22609.1.S1_x_at1/1110+20287129..20287900glutathione S-transferase GSTU6, putative
LOC_Os10g38700Os.14444.1.S1_at11/1110+20289681..20290839glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38710Os.9775.1.S1_at11/1110+20292769..20293826glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38710Os.46635.1.S1_x_at1/1110+20292769..20293826glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38720Os.46825.1.S1_at11/1110+20299403..20300301Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os10g38730OsAffx.20172.1.S1_at11/1110+20301464..20302195glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38730OsAffx.20172.1.S1_x_at11/1110+20301464..20302195glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38740Os.4762.1.S1_at11/1110+20304207..20305257glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38740Os.46634.1.S1_x_at1/1110+20304207..20305257glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38740Os.149.1.S1_at1/1110+20304207..20305257glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38750OsAffx.20171.1.S1_at11/1110+20309753..20312847transposon protein, putative, Mutator sub-class
LOC_Os10g38760OsAffx.30713.1.S1_x_at9/1110+20313372..20313827hypothetical protein
LOC_Os10g38760OsAffx.30713.1.S1_at6/1110+20313372..20313827hypothetical protein
LOC_Os10g38770OsAffx.18570.1.S1_at11/1110+20314720..20315200GRF zinc finger family protein

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Gene Ontology Classification
GO idTypeName
GO:0009407biological_processtoxin catabolism
GO:0005737cellular_componentcytoplasm
GO:0004364molecular_functionglutathione transferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14444.1.S1_at--845--8451Chr10:20290152..20290176 (25 bp)
TGGCCGCGAAGAACGGGAAGCCCTT
LOC_Os10g38700
Os.14444.1.S1_at--689--7911Chr10:20290087..20290111 (25 bp)
GGTTGCAACCTGCACTTTCTCGAAG
LOC_Os10g38700
Os.14444.1.S1_at--626--10571Chr10:20290071..20290095 (25 bp)
TTCTCGAAGCGATCCGCAGGTTGCA
LOC_Os10g38700
Os.14444.1.S1_at--96--1151Chr10:20289920..20289944 (25 bp)
AGTCCAGGCTCGTGTAGCAGCTGCT
LOC_Os10g38700
Os.14444.1.S1_at--411--9071Chr10:20289893..20289917 (25 bp)
TGCTTCCACCGCTGCCAAGTGAGTG
LOC_Os10g38700
Os.14444.1.S1_at--413--9874Chr09:22361442..22361803 (25 bp)
TACAGTGCCATTTTCAAGTCATGGT
LOC_Os09g38950
Os.14444.1.S1_at--391--2851Chr10:20289756..20289780 (25 bp)
AAGTCTGGACATGTATGCGTGTTAT
LOC_Os10g38700
Os.14444.1.S1_at--1034--9131Chr10:20289741..20289765 (25 bp)
TGCGTGTTATGTTCTCTGGTTCATC
LOC_Os10g38700
Os.14444.1.S1_at--1085--8571Chr10:20289725..20289749 (25 bp)
TGGTTCATCGATCATAAGCAGCTAT
LOC_Os10g38700
Os.14444.1.S1_at--195--3571Chr10:20289713..20289737 (25 bp)
CATAAGCAGCTATACAGACATACAG
LOC_Os10g38700
Os.14444.1.S1_at--272--1411Chr10:20289698..20289722 (25 bp)
AGACATACAGTGCTAGTGCTATTGC
LOC_Os10g38700
Target Sequence 
TGGCCGCGAAGAACGGGAAGCCCTTCTTCGGCGGCGACACCGTCGGGTACGTCGACCTCGCGCTCGGTTGCAACCTGCAC
TTTCTCGAAGCGATCCGCAGGTTGCACGGCGTGGCGTTGGTCGACGCCGGCAAGACCCCGCTCCTGGCGGCGTGGGCGGA
GCGGTTCGTGGAGGTCGAGGCGGCCAAGGGGGTGGTGCCGGACGCGGACGACGCCGTGGAGTTCGCCAGGAAAGTCCAGG
CTCGTGTAGCAGCTGCTGCTGCTTCCACCGCTGCCAAGTGAGTGGAAAATCGTTTTCGATTGGATCATTGGGTTTCTTGT
AATAAAGAAAAAATCGTGTTATTACAGTGCCATTTTCAAGTCATGGTTAGTTTATTTGTGGGGTTATTAATGTGTAAAGT
CTGGACATGTATGCGTGTTATGTTCTCTGGTTCATCGATCATAAGCAGCTATACAGACATACAGTGCTAGTGCTATTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14444.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis