Browse Element(s) Details


Os.1445.1.S1_at

Description gb:AK069905.1
DB_XREF= gi:32979929
TID=Os.1445.1
CNT=9
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.1445 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Similar to Zea mays mRNA for pyruvate decarboxylase (X17555) (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023034H21, full insert sequence.
FL= gb:AK069905.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0666011/11Pyruvate decarboxylase isozyme 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g06600Os.1440.1.S1_at11/111+3104919..3110765Acyl-coenzyme A oxidase 4, peroxisomal, putative, expressed
LOC_Os01g06600Os.1440.2.S1_x_at11/111+3104919..3110765Acyl-coenzyme A oxidase 4, peroxisomal, putative, expressed
LOC_Os01g06610NANA1+3112964..3113704retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g06620Os.9437.1.S1_at11/111+3119707..3120853expressed protein
LOC_Os01g06630NANA1+3121609..3122002Small hydrophilic plant seed protein
LOC_Os01g06640Os.1443.1.S1_a_at11/111+3125794..3127451Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g06650OsAffx.21870.3.S1_x_at1/111+3131019..3132211hypothetical protein
LOC_Os01g06650OsAffx.21870.2.S1_x_at1/111+3131019..3132211hypothetical protein
LOC_Os01g06660Os.1445.1.S1_at11/111+3132906..3137019Pyruvate decarboxylase isozyme 1, putative, expressed
LOC_Os01g06670Os.32879.1.S1_at11/111+3140403..3143614Leucine Rich Repeat family protein, expressed
LOC_Os01g06670Os.32879.1.S2_at11/111+3140403..3143614Leucine Rich Repeat family protein, expressed
LOC_Os01g06680OsAffx.1685.1.S1_at11/111+3144653..3149303retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os01g06680OsAffx.22766.1.S1_at11/111+3144653..3149303retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os01g06680OsAffx.25437.1.S1_at2/111+3144653..3149303retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os01g06680OsAffx.15781.1.S1_at2/111+3144653..3149303retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os01g06680Os.8855.1.S1_at1/111+3144653..3149303retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os01g06690OsAffx.24927.2.S1_x_at11/111+3153981..3155789hypothetical protein
LOC_Os01g06690OsAffx.24927.1.S1_x_at7/111+3153981..3155789hypothetical protein
LOC_Os01g06700OsAffx.30352.2.S1_at11/111+3158122..3164468retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0001666biological_processresponse to hypoxia
GO:0009082biological_processbranched chain family amino acid biosynthesis
GO:0003984molecular_functionacetolactate synthase activity
GO:0004737molecular_functionpyruvate decarboxylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.1445.1.S1_at--19--5411Chr01:3133736..3133849 (25 bp)
GAAGCTTTCAGGTGACGGCACAAGA
LOC_Os01g06660
Os.1445.1.S1_at--782--1471Chr01:3133604..3133628 (25 bp)
AGAATTGGAACTACACCGGTGTGGT
LOC_Os01g06660
Os.1445.1.S1_at--148--3371Chr01:3133591..3133615 (25 bp)
CACCGGTGTGGTGGAAGCGTTCCAT
LOC_Os01g06660
Os.1445.1.S1_at--633--991Chr01:3133467..3133577 (25 bp)
AGTGCTACACGGCAAAGGTCCGAAC
LOC_Os01g06660
Os.1445.1.S1_at--1138--6571Chr01:3133393..3133417 (25 bp)
GATTGCTTGTGCTTCATAGAGGTGA
LOC_Os01g06660
Os.1445.1.S1_at--504--6831Chr01:3133318..3133342 (25 bp)
GTTTCTGCTGCAAATAGCCGCCCAC
LOC_Os01g06660
Os.1445.1.S1_at--2--551Chr01:3133290..3133314 (25 bp)
ATCCTCAGTGAGTACGTCAGATATC
LOC_Os01g06660
Os.1445.1.S1_at--208--1271Chr01:3133272..3133296 (25 bp)
AGATATCCGACTTGCCATGTTTTGA
LOC_Os01g06660
Os.1445.1.S1_at--11--1111Chr01:3133228..3133252 (25 bp)
AGTGGTCTTCGAATAAGTTGCGCAT
LOC_Os01g06660
Os.1445.1.S1_at--685--4111Chr01:3133208..3133232 (25 bp)
CGCATGTAATTAGCCGCTGTTGTAA
LOC_Os01g06660
Os.1445.1.S1_at--232--191Chr01:3133161..3133185 (25 bp)
ATTTCAGACTCTCATACCTGTATTA
LOC_Os01g06660
Target Sequence 
GAAGCTTTCAGGTGACGGCACAAGAAGTGTCGACAATGCTTCGTTGGGGGCAGAAAAGCATCATCTTCCTCATAAACAAT
GGAGGGTACACCATCGAGGTGGAGATCCATGACGGTCCTTACAATGTCATCAAGAATTGGAACTACACCGGTGTGGTGGA
AGCGTTCCATAATGGCGAGGGGAAGTGCTACACGGCAAAGGTCCGAACNGAGGAGGAACTGAAGNGAANCNATTGAAGAA
GCTCAGGGACCTAAGAAGGATTGCTTGTGCTTCATAGAGGTGATTGTACACAAGGATGACACAAGTAAGGAGCTTCTTGA
GTGGGGCTCCAGAGTTTCTGCTGCAAATAGCCGCCCACCAAATCCTCAGTGAGTACGTCAGATATCCGACTTGCCATGTT
TTGATTAGGAAAATGTGAATTTCAGTGGTCTTCGAATAAGTTGCGCATGTAATTAGCCGCTGTTGTAAGTGTTGTAAGTG
GTTAGAAATGATTTCAGACTCTCATACCTGTATTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.1445.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis