Browse Element(s) Details


Os.14625.1.S1_at

Description gb:AK065179.1
DB_XREF= gi:32975197
TID=Os.14625.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.14625 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013002D15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013002D15, full insert sequence.
FL= gb:AK065179.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1481011/115' nucleotidase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g14770OsAffx.22233.5.S1_x_at11/111+8256318..8258315expressed protein
LOC_Os01g14780NANA1+8264713..8266071hypothetical protein
LOC_Os01g14790Os.49444.1.S1_at11/111+8266390..8269429expressed protein
LOC_Os01g14790Os.38074.1.S1_s_at11/111+8266390..8269429expressed protein
LOC_Os01g14790Os.49444.1.S1_s_at11/111+8266390..8269429expressed protein
LOC_Os01g14790Os.38074.1.S1_x_at10/111+8266390..8269429expressed protein
LOC_Os01g14790Os.38074.1.S1_at7/111+8266390..8269429expressed protein
LOC_Os01g14790OsAffx.20033.1.S1_at1/111+8266390..8269429expressed protein
LOC_Os01g14800OsAffx.22232.1.S1_at7/111+8270288..8270743hypothetical protein
LOC_Os01g14810Os.14625.1.S1_at11/111+8272276..82807615' nucleotidase family protein, putative, expressed
LOC_Os01g14820Os.33563.1.A1_at11/111+8281271..8285922expressed protein
LOC_Os01g14820Os.43805.1.S1_x_at11/111+8281271..8285922expressed protein
LOC_Os01g14820Os.43805.1.S1_at11/111+8281271..8285922expressed protein
LOC_Os01g14830Os.9946.1.S1_at11/111+8288164..829295950S ribosomal protein L3-2, chloroplast precursor, putative, expressed
LOC_Os01g14840Os.307.1.S2_at11/111+8294417..8299203expressed protein
LOC_Os01g14840Os.307.1.S1_at11/111+8294417..8299203expressed protein
LOC_Os01g14850Os.9962.1.S1_s_at11/111+8302510..8303347expressed protein
LOC_Os01g14850Os.45916.1.S1_x_at11/111+8302510..8303347expressed protein
LOC_Os01g14850Os.45916.1.S1_s_at9/111+8302510..8303347expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0008253molecular_function5'-nucleotidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14625.1.S1_at--403--9911Chr01:8279863..8279887 (25 bp)
TACTCCATTCATGTATTTCCAATCA
LOC_Os01g14810
Os.14625.1.S1_at--460--1391Chr01:8280269..8280293 (25 bp)
AGACGCTTGGGCATGACGTGCATTC
LOC_Os01g14810
Os.14625.1.S1_at--1155--8931Chr01:8280282..8280306 (25 bp)
TGACGTGCATTCCTATTCCCGGAGG
LOC_Os01g14810
Os.14625.1.S1_at--24--2211Chr01:8280309..8280333 (25 bp)
ACAACACTGACATTCGTTCGATTCA
LOC_Os01g14810
Os.14625.1.S1_at--4--3631Chr01:8280429..8280453 (25 bp)
CTTGATGCAGCGAGGCAGGCCATTT
LOC_Os01g14810
Os.14625.1.S1_at--980--3471Chr01:8280444..8280468 (25 bp)
CAGGCCATTTGGAACGTTTTCGCGT
LOC_Os01g14810
Os.14625.1.S1_at--1099--5431Chr01:8280455..8280479 (25 bp)
GAACGTTTTCGCGTTACGTAGCGAT
LOC_Os01g14810
Os.14625.1.S1_at--789--4631Chr01:8280475..8280499 (25 bp)
GCGATTATGTCGTGTATAGCTGTGT
LOC_Os01g14810
Os.14625.1.S1_at--558--5191Chr01:8280546..8280570 (25 bp)
GAATAAGCCCGTGCGGTCGTTTTCT
LOC_Os01g14810
Os.14625.1.S1_at--817--6431Chr01:8280678..8280702 (25 bp)
GATCATCTCAGCATCTGTCTAAACT
LOC_Os01g14810
Os.14625.1.S1_at--1016--8711Chr01:8280693..8280717 (25 bp)
TGTCTAAACTCTGGACTGTCACTTG
LOC_Os01g14810
Target Sequence 
TACTCCATTCATGTATTTCCAATCACAAGAACAGACGCTTGGGCATGACGTGCATTCCTATTCCCGGAGGCNACAACACT
GACATTCGTTCGATTCATCATTCATGTGGTGGAGTTGGGAGAAAAATCGGTAGAGATAGAAAGGCAGCTGGATGGACGTG
CTTGTGCCAGTGTGTGANCCGTGGCGATTGATCTTGATGCAGCGAGGCAGGCCATTTGGAACGTTTTCGCGTTACGTAGC
GATTATGTCGTGTATAGCTGTGTGTACTTGGGGTGTAAGTAGAGTCATTAGCTTGTAATAACACGATTGGAATAAGCCCG
TGCGGTCGTTTTCTTCTTTCTGCTCGCCGACTCAAAAGAAATTTGGTTTGGTTAGGCAGAACGACCGTGGAAAGTTGGGC
ATGTAATTTGTAAACTTTTAAGTTTTGTAAGATTTTCATCTGATCATCTCAGCATCTGTCTAAACTCTGGACTGTCACTT
G

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14625.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis