Browse Element(s) Details


Os.1506.1.S1_at

Description gb:AK066632.1
DB_XREF= gi:32976650
TID=Os.1506.1
CNT=41
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.1506 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative dihydrolipoamide dehydrogenase precursor (P0554D10.3), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013072D16, full insert sequence.
FL= gb:AK066632.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2252010/11Dihydrolipoyl dehydrogenase, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g22450OsAffx.11158.1.S1_at8/111+12610507..12612419hypothetical protein
LOC_Os01g22450Os.45671.1.S1_x_at5/111+12610507..12612419hypothetical protein
LOC_Os01g22450Os.45671.1.S1_at4/111+12610507..12612419hypothetical protein
LOC_Os01g22480Os.33000.1.S1_x_at11/111+12618924..12623156F-box domain containing protein, expressed
LOC_Os01g22480Os.33000.1.S2_at10/111+12618924..12623156F-box domain containing protein, expressed
LOC_Os01g22490Os.28209.2.S1_at11/111+12628070..12628889ubiquitin, putative, expressed
LOC_Os01g22500Os.1574.1.S1_at11/111+12629067..12632493Bucentaur or craniofacial development family protein, expressed
LOC_Os01g22510OsAffx.1782.2.S1_at11/111+12633021..12636871Streptomyces cyclase/dehydrase family protein, expressed
LOC_Os01g22510Os.1505.1.S1_x_at9/111+12633021..12636871Streptomyces cyclase/dehydrase family protein, expressed
LOC_Os01g22520Os.1506.1.S1_at10/111+12637348..12640956Dihydrolipoyl dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os01g22520OsAffx.26764.1.S1_x_at1/111+12637348..12640956Dihydrolipoyl dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os01g22530OsAffx.23340.1.S1_at11/111+12643396..12643882hypothetical protein
LOC_Os01g22530OsAffx.23340.1.S1_x_at11/111+12643396..12643882hypothetical protein
LOC_Os01g22540OsAffx.23341.2.S1_at11/111+12647201..12647921hypothetical protein
LOC_Os01g22540OsAffx.23341.1.S1_s_at11/111+12647201..12647921hypothetical protein
LOC_Os01g22540OsAffx.23341.1.S1_at4/111+12647201..12647921hypothetical protein
LOC_Os01g22550Os.53990.1.S1_at11/111+12649850..12655220Galactosyltransferase family protein, expressed
LOC_Os01g22560Os.11128.1.S1_at2/111+12659818..12660612Acyltransferase family protein, expressed
LOC_Os01g22570NANA1+12664814..12665909Glycerol-3-phosphate acyltransferase 1, putative

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Gene Ontology Classification
GO idTypeName
GO:0009416biological_processresponse to light stimulus
GO:0005739cellular_componentmitochondrion
GO:0005759cellular_componentmitochondrial matrix
GO:0009570cellular_componentchloroplast stroma
GO:0004148molecular_functiondihydrolipoyl dehydrogenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.1506.1.S1_at--298--711Chr01:12637789..12637813 (25 bp)
ATGAGGCTGTCCTTGCTTTGCAGTA
LOC_Os01g22520
Os.1506.1.S1_at--9--8891Chr01:12637752..12637776 (25 bp)
TGAGGACATAGCTCGTACATGCCAC
LOC_Os01g22520
Os.1506.1.S1_at--1122--4351Chr01:12637720..12637744 (25 bp)
CCACCGTGAGCGAAGCCTTGAAGGA
LOC_Os01g22520
Os.1506.1.S1_at--503--2091Chr01:12637638..12637662 (25 bp)
ACATCCAAACTGCTTGGCTTCACAA
LOC_Os01g22520
Os.1506.1.S1_at--47--2351Chr01:12637573..12637597 (25 bp)
AAAGCCACTGTCTGTCATTTTACTC
LOC_Os01g22520
Os.1506.1.S1_at--833--171Chr01:12637557..12637581 (25 bp)
ATTTTACTCTCGTTCGTGATGCTGT
LOC_Os01g22520
Os.1506.1.S1_at--380--5211Chr01:12637532..12637556 (25 bp)
GAATTGACACTAGTTGCCACAGCCA
LOC_Os01g22520
Os.1506.1.S1_at--73--6591Chr01:12637492..12637516 (25 bp)
GATTCCATTCCCTTAGATGCTATAC
LOC_Os01g22520
Os.1506.1.S1_at--1059--4711Chr01:12637447..12637471 (25 bp)
GCTGGATCTGTCATTTTGGTGTGTA
LOC_Os01g22520
Os.1506.1.S1_at--937--4711Chr01:12637355..12637379 (25 bp)
GCTGGATCTGTCTCCAACAGTTGTA
LOC_Os01g22520
Os.1506.1.S1_at--603--6631Chr01:12637336..12637360 (25 bp)
GTTGTACGGATTCATCGTCTGCTTT
NONE
Target Sequence 
ATGAGGCTGTCCTTGCTTTGCAGTATGGAGCATCAAGTGAGGACATAGCTCGTACATGCCACGCTCATCCCACCGTGAGC
GAAGCCTTGAAGGAGGCCTGCCTGCAAACCTTCACAAAGGCGATTCACATTTAAGTTCTGTTTTGCTTTTAACATCCAAA
CTGCTTGGCTTCACAAATTCCAAAATTTTGTAATAATTTTGGATATATGGGATCAAAAAGCCACTGTCTGTCATTTTACT
CTCGTTCGTGATGCTGTGAATTGACACTAGTTGCCACAGCCAATAGTATATGCTATTGATTCCATTCCCTTAGATGCTAT
ACATCATTCTCTAAGATATGAAGCTGGATCTGTCATTTTGGTGTGTANTCACAAAAAAATGGGAAAACGTGCTGGATGAA
TGTCTAGCGCAAAACAATTTTTCTACAATATAAAGCTGGATCTGTCTCCAACAGTTGTACGGATTCATCGTCTGCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.1506.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis