Browse Element(s) Details


Os.1526.2.S1_x_at

Description gb:NM_183857.1
DB_XREF= gi:34894841
GEN=P0554D10.24
TID=Os.1526.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.1526 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative lipase homolog (P0554D10.25), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0554D10.24 (P0554D10.24), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2266011/11GDSL-like Lipase/Acylhydrolase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g22620Os.40855.5.S1_x_at4/111+12705632..12706909hypothetical protein
LOC_Os01g22630Os.1521.1.S2_at11/111+12707622..12714007YT521-B-like family protein, expressed
LOC_Os01g22630Os.1521.1.S1_at11/111+12707622..12714007YT521-B-like family protein, expressed
LOC_Os01g22640Os.38245.2.S1_x_at11/111+12716579..12720574GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g22640Os.38245.1.S1_at11/111+12716579..12720574GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g22640Os.38245.2.S1_at11/111+12716579..12720574GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g22650OsAffx.11160.1.S1_s_at11/111+12722094..12722522hypothetical protein
LOC_Os01g22660Os.1526.2.S1_x_at11/111+12724557..12727990GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g22660Os.1526.2.S1_at11/111+12724557..12727990GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g22660Os.1526.1.S1_at11/111+12724557..12727990GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g22660Os.24642.1.S1_at1/111+12724557..12727990GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g22670NANA1+12728238..12729340Papain family cysteine protease containing protein
LOC_Os01g22680Os.8360.1.S1_at2/111+12734448..12735643Papain family cysteine protease containing protein
LOC_Os01g22700OsAffx.23343.1.S1_at11/111+12739416..12740069transporter, putative
LOC_Os01g22710OsAffx.23343.1.S1_at2/111+12740999..12742624major facilitator superfamily protein, expressed
LOC_Os01g22710Os.46485.1.S1_at1/111+12740999..12742624major facilitator superfamily protein, expressed
LOC_Os01g22720OsAffx.11162.1.S1_at9/111+12747833..12752164hypothetical protein
LOC_Os01g22720Os.52284.2.S1_x_at1/111+12747833..12752164hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016789molecular_functioncarboxylic ester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.1526.2.S1_x_at--456--3551Chr01:12724661..12724685 (25 bp)
CATCGTCATCCAATGTCGGCAGCTG
LOC_Os01g22660
Os.1526.2.S1_x_at--444--7131Chr01:12724665..12724689 (25 bp)
GTCATCCAATGTCGGCAGCTGCGAG
LOC_Os01g22660
Os.1526.2.S1_x_at--1127--4371Chr01:12724670..12724694 (25 bp)
CCAATGTCGGCAGCTGCGAGGTCGA
LOC_Os01g22660
Os.1526.2.S1_x_at--564--6151Chr01:12724687..12724711 (25 bp)
GAGGTCGAGCGCGTTCTTGACATTA
LOC_Os01g22660
Os.1526.2.S1_x_at--966--5871Chr01:12724693..12724717 (25 bp)
GAGCGCGTTCTTGACATTATGGAGC
LOC_Os01g22660
Os.1526.2.S1_x_at--228--9591Chr01:12724701..12724725 (25 bp)
TCTTGACATTATGGAGCGCGGTGGT
LOC_Os01g22660
Os.1526.2.S1_x_at--96--7571Chr01:12724782..12724806 (25 bp)
GGGCGCGGCCGGTGGTGTTCAACTT
LOC_Os01g22660
Os.1526.2.S1_x_at--90--4371Chr01:12724814..12724838 (25 bp)
TCCAACTCGGACACGGGCGGGATGG
LOC_Os01g22660
Os.1526.2.S1_x_at--1152--511Chr01:12724928..12725002 (25 bp)
ATCGACTTCCTCTCTTTTGCATTCG
LOC_Os01g22660
Os.1526.2.S1_x_at--1040--10391Chr01:12724992..12725016 (25 bp)
TTTTGCATTCGTCGAGTTCTCTCTT
LOC_Os01g22660
Os.1526.2.S1_x_at--332--111Chr01:12724998..12725022 (25 bp)
ATTCGTCGAGTTCTCTCTTCTCTTC
LOC_Os01g22660
Target Sequence 
CATCGTCATCCAATGTCGGCAGCTGCGAGGTCGAGCGCGTTCTTGACATTATGGAGCGCGGTGGTGGTGGTGGCAGCAGT
GGCACCGACGGTGGCGGCGGCGGGGTTCAGCTGCCGGGGCGGGGCGCGGCCGGTGGTGTTCAACTTCGGGGACTCCAACT
CGGACACGGGCGGGATGGCGGCGGCGATGGGGTGGCGCATCAGGCGGCCGGAGGGCCGCGCCTTCTTCCACCACCCCACC
GGCCGGTTCTGCGACGGCCGCCTCACCATCGACTTCCTCTCTTTTGCATTCGTCGAGTTCTCTCTTCTCTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.1526.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis