Browse Element(s) Details


Os.15532.1.S1_at

Description gb:AK121690.1
DB_XREF= gi:37991313
TID=Os.15532.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.15532 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative MRP-like ABC transporter (OSJNBa0089K24.15), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033071F24, full insert sequence.
FL= gb:AK121690.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0787011/11multidrug resistance associated protein MRP2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g07850OsAffx.10957.1.S1_x_at10/111+3776693..3778690lactoylglutathione lyase family protein, putative
LOC_Os01g07850OsAffx.10957.1.S1_at9/111+3776693..3778690lactoylglutathione lyase family protein, putative
LOC_Os01g07850OsAffx.30690.1.S1_x_at1/111+3776693..3778690lactoylglutathione lyase family protein, putative
LOC_Os01g07860NANA1+3780493..3783045retrotransposon protein, putative, unclassified
LOC_Os01g07870Os.15532.1.S1_at11/111+3801474..3807871multidrug resistance associated protein MRP2, putative, expressed
LOC_Os01g07880OsAffx.1957.1.S1_at11/111+3807990..3808871bZIP transcription factor family protein, expressed
LOC_Os01g07890Os.25117.1.A1_at11/111+3814848..3815560expressed protein
LOC_Os01g07900Os.50446.1.S1_at10/111+3815888..3816584expressed protein
LOC_Os01g07910Os.53199.1.S1_at10/111+3816979..3821315NADH-cytochrome b5 reductase, putative, expressed
LOC_Os01g07920OsAffx.10958.1.S1_x_at11/111+3823844..3827128prolyl 4-hydroxylase, putative, expressed
LOC_Os01g07920Os.32457.1.S1_at11/111+3823844..3827128prolyl 4-hydroxylase, putative, expressed
LOC_Os01g07930Os.32457.2.S1_at11/111+3827294..3828648Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os01g07940Os.33127.2.S1_x_at11/111+3831931..3834507Protein kinase domain containing protein, expressed
LOC_Os01g07940Os.33127.1.S1_at11/111+3831931..3834507Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0042626molecular_functionATPase activity, coupled to transmembrane movement of substances
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15532.1.S1_at--1061--7131Chr01:3806758..3806779 (22 bp)
GTCTTGCTCCTTGACAACGGTGTGG
LOC_Os01g07870
Os.15532.1.S1_at--791--1951Chr01:3806986..3807010 (25 bp)
ACTGGAGGACAAGTCGTCTCTCTTC
LOC_Os01g07870
Os.15532.1.S1_at--104--10551Chr01:3807008..3807032 (25 bp)
TTCTCCAAGCTCGTAGCGGAATACA
LOC_Os01g07870
Os.15532.1.S1_at--975--8891Chr01:3807036..3807060 (25 bp)
TGAGATCGACGCACACGTAGCAGAG
LOC_Os01g07870
Os.15532.1.S1_at--990--4271Chr01:3807073..3807097 (25 bp)
CCTGTTGACGCGATGGCCGTTTTGA
LOC_Os01g07870
Os.15532.1.S1_at--120--4511Chr01:3807088..3807112 (25 bp)
GCCGTTTTGAGGCTAGCTGACACGT
LOC_Os01g07870
Os.15532.1.S1_at--149--1611Chr01:3807102..3807126 (25 bp)
AGCTGACACGTCGATAATGCCGAAA
LOC_Os01g07870
Os.15532.1.S1_at--896--9771Chr01:3807157..3807181 (25 bp)
TAAGTAGCGAGCTGGAAAGTACCCA
LOC_Os01g07870
Os.15532.1.S1_at--521--10631Chr01:3807214..3807238 (25 bp)
TTCGCACGATCTGAAATGAAGCTCA
LOC_Os01g07870
Os.15532.1.S1_at--443--3091Chr01:3807311..3807335 (25 bp)
AATAAAGGGTGTAAGCTGCTGATCA
LOC_Os01g07870
Os.15532.1.S1_at--1073--6451Chr01:3807425..3807449 (25 bp)
GATAATACCGTGTAACCCGATTGAC
LOC_Os01g07870
Target Sequence 
GTCTTGCTCCTTGACAACGGTGTGGCCGTGGAGCGCGACACGCCGACCAGNCTACTGGAGGACAAGTCGTCTCTCTTCTC
CAAGCTCGTAGCGGAATACACGATGAGATCGACGCACACGTAGCAGAGAAGGTCAGTGCNCCTGTTGACGCGATGGCCGT
TTTGAGGCTAGCTGACACGTCGATAATGCCGAAAAATCNCACTTACTAGTAGGNGGATGAGATTTTAAGTAGCGAGCTGG
AAAGTACCCAGTGTTNGTGCTCANAATACAGNGNGCTANTTCTTCGCACGATCTGAAATGAAGCTCANGNTCAAGAGGGG
AAAGATGCTTTTAGAGGACAACAGNAGTAGTAGTGCTATTAAACTAGCGTTGATGTCTGAATAAAGGGTGTAAGCTGCTG
ATCATTAGGGGAACAACCANATCCTGATCAGTGATCACTACTAGTNCGTCGTAGAAAGGGGACTATTACACGNAAGGGAA
TTAGAATTTTCNGGATAATACCGTGTAACCCGATTGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15532.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis