Browse Element(s) Details


Os.15830.1.S1_at

Description gb:AK060423.1
DB_XREF= gi:32970441
TID=Os.15830.1
CNT=23
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.15830 (NCBI UniGene Cluster)
UG_TITLE=Alanine:glyoxylate aminotransferase-like protein mRNA, partial cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-010-H01, full insert sequence.
FL= gb:AK060423.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3977011/11Alanine-glyoxylate aminotransferase 2 homolog 3, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g39740OsAffx.22947.1.S1_x_at11/115+23242670..23249030retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g39740OsAffx.22947.3.S1_x_at5/115+23242670..23249030retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g39740OsAffx.22947.2.S1_x_at3/115+23242670..23249030retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g39740OsAffx.22947.5.S1_x_at3/115+23242670..23249030retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g39750OsAffx.16572.4.S1_at11/115+23265370..23265660hypothetical protein
LOC_Os05g39750OsAffx.16572.4.S1_x_at11/115+23265370..23265660hypothetical protein
LOC_Os05g39750OsAffx.16572.1.S1_x_at1/115+23265370..23265660hypothetical protein
LOC_Os05g39760Os.9908.1.S1_at11/115+23268719..23273322VHS domain containing protein, expressed
LOC_Os05g39770Os.15830.1.S1_at11/115+23272136..23276828Alanine-glyoxylate aminotransferase 2 homolog 3, mitochondrial precursor, putative, expressed
LOC_Os05g39780Os.38395.3.S1_x_at10/115+23284794..23289032transposon protein, putative, Mutator sub-class
LOC_Os05g39780Os.38395.2.S1_x_at8/115+23284794..23289032transposon protein, putative, Mutator sub-class
LOC_Os05g39780Os.38395.4.S1_x_at6/115+23284794..23289032transposon protein, putative, Mutator sub-class
LOC_Os05g39780Os.38395.1.S1_at1/115+23284794..23289032transposon protein, putative, Mutator sub-class
LOC_Os05g39780Os.38395.5.S1_at1/115+23284794..23289032transposon protein, putative, Mutator sub-class
LOC_Os05g39790OsAffx.29842.1.S1_at11/115+23291478..23294412transposon protein, putative, unclassified
LOC_Os05g39790OsAffx.29842.2.S1_x_at5/115+23291478..23294412transposon protein, putative, unclassified
LOC_Os05g39790OsAffx.29842.3.S1_x_at3/115+23291478..23294412transposon protein, putative, unclassified
LOC_Os05g39790OsAffx.29842.2.S1_at3/115+23291478..23294412transposon protein, putative, unclassified
LOC_Os05g39790OsAffx.29842.3.S1_at3/115+23291478..23294412transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006561biological_processproline biosynthesis
GO:0042538biological_processhyperosmotic salinity response
GO:0005739cellular_componentmitochondrion
GO:0003992molecular_functionacetylornithine transaminase activity
GO:0004587molecular_functionornithine-oxo-acid transaminase activity
GO:0008453molecular_functionalanine-glyoxylate transaminase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15830.1.S1_at--965--6651Chr05:23273657..23273681 (25 bp)
GTTGAGCTGGTGACCGATCGCCAGA
LOC_Os05g39770
Os.15830.1.S1_at--120--8791Chr05:23273453..23273477 (25 bp)
TGTTCAGAGTAACACCTCCACTATG
LOC_Os05g39770
Os.15830.1.S1_at--194--1331Chr05:23273312..23273443 (25 bp)
AGAGGACTCCGATTTCTTCATTGAG
LOC_Os05g39770
Os.15830.1.S1_at--821--6231Chr05:23273285..23273309 (25 bp)
GATGGACATTTCACTATCGAAGCTG
LOC_Os05g39770
Os.15830.1.S1_at--187--7251Chr05:23273229..23273253 (25 bp)
GTCCGCATGTGATCCGTATCCATAA
LOC_Os05g39770
Os.15830.1.S1_at--392--1271Chr05:23273185..23273209 (25 bp)
AGATAGCACCTCGTTGTCTCGTAAT
LOC_Os05g39770
Os.15830.1.S1_at--1149--7151Chr05:23273170..23273194 (25 bp)
GTCTCGTAATATGTCCTGCAAACCC
LOC_Os05g39770
Os.15830.1.S1_at--780--4751Chr05:23273138..23273162 (25 bp)
GCTGCTCAACACATGGTCCAATAGG
LOC_Os05g39770
Os.15830.1.S1_at--611--9251Chr05:23273110..23273134 (25 bp)
TCCTCCGGTCTCTAATCAGATGTGT
LOC_Os05g39770
Os.15830.1.S1_at--554--7371Chr05:23273084..23273108 (25 bp)
GTGACTCGTGACCAATAAGCGCATG
LOC_Os05g39770
Os.15830.1.S1_at--272--5431Chr05:23273007..23273031 (25 bp)
GAACCAATCACAATGCCCAGGCGAT
LOC_Os05g39770
Target Sequence 
GTTGAGCTGGTGACCGATCGCCAGAAGAAGACACCGGCCAAAGTTGAGATCGGTCATGTCATGAACCACATGAAAGACAT
GGGTGTGCTGGTTGGGAAAGGTGGTTTCTACGGGAACGTGTTCAGAGTAACACCTCCACTATGCTTCACCAAAGAGGACT
CCGATTTCTTCATTGAGGCGATGGACATTTCACTATCGAAGCTGTGAGTCGGAGAGGGACTGGCAGGATCAACCTGTCCG
CATGTGATCCGTATCCATAAATAATGTTGGGGATTGGTGAGATAGCACCTCGTTGTCTCGTAATATGTCCTGCAAACCCA
CCATGCGCTGCTCAACACATGGTCCAATAGGCGCTCCTCCGGTCTCTAATCAGATGTGTTGTGACTCGTGACCAATAAGC
GCATGTCAATGTCAGATGTATTGTTATAGTTATTGTTTACATGCTGAACGACAAAACGAACCAATCACAATGCCCAGGCG
AT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15830.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis