Browse Element(s) Details


Os.15848.1.A1_a_at

Description gb:AK120584.1
DB_XREF= gi:37990207
TID=Os.15848.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.15848 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative prolyl 4-hydroxylase, alpha subunit (OSJNBa0017E08.15), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013136I05, full insert sequence.
FL= gb:AK120584.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3547011/11prolyl 4-hydroxylase alpha subunit, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g35450Os.46897.1.S1_a_at11/1110+18640884..18645624Protein kinase domain containing protein, expressed
LOC_Os10g35460Os.15633.1.S2_at11/1110+18646403..18649458COBRA-like protein 2 precursor, putative, expressed
LOC_Os10g35460Os.15633.1.S1_at11/1110+18646403..18649458COBRA-like protein 2 precursor, putative, expressed
LOC_Os10g35470Os.15848.1.A1_a_at11/1110+18651758..18655606prolyl 4-hydroxylase alpha subunit, putative, expressed
LOC_Os10g35480Os.19949.1.S1_s_at11/1110+18657099..18659375Lanthionine synthetase C-like protein, expressed
LOC_Os10g35480Os.46469.1.S1_at11/1110+18657099..18659375Lanthionine synthetase C-like protein, expressed
LOC_Os10g35490Os.46397.1.S1_x_at11/1110+18659706..18661510epoxide hydrolase, putative, expressed
LOC_Os10g35500Os.48028.1.S1_x_at11/1110+18664962..18667187expressed protein
LOC_Os10g35500Os.53171.1.S1_at11/1110+18664962..18667187expressed protein
LOC_Os10g35500OsAffx.12199.1.A1_at1/1110+18664962..18667187expressed protein
LOC_Os10g35510Os.47130.4.A1_x_at3/1110+18668119..18668442retrotransposon protein, putative, unclassified
LOC_Os10g35520Os.23214.1.S1_at11/1110+18669203..18671431epoxide hydrolase, putative, expressed
LOC_Os10g35520Os.46591.1.S1_x_at1/1110+18669203..18671431epoxide hydrolase, putative, expressed
LOC_Os10g35520Os.46591.2.S1_x_at1/1110+18669203..18671431epoxide hydrolase, putative, expressed
LOC_Os10g35530Os.46591.2.S1_x_at10/1110+18672608..18674568epoxide hydrolase, putative, expressed
LOC_Os10g35530Os.46591.1.S1_x_at10/1110+18672608..18674568epoxide hydrolase, putative, expressed
LOC_Os10g35530Os.46591.1.S1_at9/1110+18672608..18674568epoxide hydrolase, putative, expressed
LOC_Os10g35540Os.46650.1.S1_at11/1110+18676322..18678143hydrolase, alpha/beta fold family protein, expressed
LOC_Os10g35550Os.21457.1.S1_at11/1110+18680095..18684612U5 snRNP-associated 102 kDa protein, putative, expressed
LOC_Os10g35550Os.10271.2.S1_x_at4/1110+18680095..18684612U5 snRNP-associated 102 kDa protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0018401biological_processpeptidyl-proline hydroxylation to 4-hydroxy-L-proline
GO:0016706molecular_functionoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15848.1.A1_a_at--578--8891Chr10:18654806..18654830 (25 bp)
TGAGACTATTTTCCCCTCTTCTAAA
LOC_Os10g35470
Os.15848.1.A1_a_at--359--9311Chr10:18654817..18654841 (25 bp)
TCCCCTCTTCTAAAGCTAACAGCAG
LOC_Os10g35470
Os.15848.1.A1_a_at--388--2151Chr10:18654835..18654859 (25 bp)
ACAGCAGCTCATCACCATTTTATAA
LOC_Os10g35470
Os.15848.1.A1_a_at--374--7311Chr10:18654874..18654898 (25 bp)
GTGCTAAGAAGGGTTTGGCTGTCAA
LOC_Os10g35470
Os.15848.1.A1_a_at--359--4891Chr10:18654920..18654944 (25 bp)
GCTTTTCTGGAGCATGAGGCCTGAT
LOC_Os10g35470
Os.15848.1.A1_a_at--785--4471Chr10:18654938..18654962 (25 bp)
GCCTGATGGGTCTTTGGATGCCACA
LOC_Os10g35470
Os.15848.1.A1_a_at--997--10851Chr10:18654951..18654975 (25 bp)
TTGGATGCCACAAGCCTTCATGGTG
LOC_Os10g35470
Os.15848.1.A1_a_at--768--211Chr10:18655332..18655356 (25 bp)
ATTTGTCGATGTTGTTGCTTAAAGA
LOC_Os10g35470
Os.15848.1.A1_a_at--1162--5511Chr10:18655364..18655388 (25 bp)
GAAAAGCGGTCATTTTTGGCGCATG
LOC_Os10g35470
Os.15848.1.A1_a_at--1155--10391Chr10:18655377..18655401 (25 bp)
TTTTGGCGCATGTTGAGGACTTCAA
LOC_Os10g35470
Os.15848.1.A1_a_at--148--6191Chr10:18655391..18655415 (25 bp)
GAGGACTTCAATTTTTCCATAGAGA
LOC_Os10g35470
Target Sequence 
TGAGACTATTTTCCCCTCTTCTAAAGCTAACAGCAGCTCATCACCATTTTATAATGAGCTGTCTGAATGTGCTAAGAAGG
GTTTGGCTGTCAAACCCAAGATGGGAGATGCTTTGCTTTTCTGGAGCATGAGGCCTGATGGGTCTTTGGATGCCACAAGC
CTTCATGGTGGATGTCCAGTGATANANNNNNACAAATGGTCATCGACNNAGTGGATGCGTGTTCATGAGTACAAGATATA
GACATCAGAAACTAGAGATTCAGAGGTTACTCACGAATTCAAATTTGTCGATGTTGTTGCTTAAAGAAAGAAAAGAAAAG
CGGTCATTTTTGGCGCATGTTGAGGACTTCAATTTTTCCATAGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15848.1.A1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis