Browse Element(s) Details

Os.15870.1.S1_s_at

Description

gb:BU673785
DB_XREF= gi:23514746
DB_XREF=NL_20_27
CLONE=NL_20_27
TID=Os.15870.1
CNT=9
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.15870 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_186894.1 (A.thaliana) cell division protein FtsH-like protein (Arabidopsis thaliana)
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os04g39190	10/11	cell division protein FtsH, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os04g39160	Os.24653.1.A1_s_at	11/11	4	+	23065706..23071398	RNA dependent RNA polymerase family protein, expressed
LOC_Os04g39160	Os.51949.1.S1_at	11/11	4	+	23065706..23071398	RNA dependent RNA polymerase family protein, expressed
LOC_Os04g39170	Os.14783.2.S1_at	11/11	4	+	23072254..23076090	expressed protein
LOC_Os04g39170	Os.14783.1.S1_at	11/11	4	+	23072254..23076090	expressed protein
LOC_Os04g39180	OsAffx.26385.1.S1_at	11/11	4	+	23074855..23078904	Protein kinase domain containing protein, expressed
LOC_Os04g39190	OsAffx.4028.1.S1_at	11/11	4	+	23086590..23092107	cell division protein FtsH, putative, expressed
LOC_Os04g39190	OsAffx.4028.1.S1_x_at	11/11	4	+	23086590..23092107	cell division protein FtsH, putative, expressed
LOC_Os04g39190	Os.52019.1.A1_at	11/11	4	+	23086590..23092107	cell division protein FtsH, putative, expressed
LOC_Os04g39190	Os.15870.1.S1_s_at	10/11	4	+	23086590..23092107	cell division protein FtsH, putative, expressed
LOC_Os04g39200	OsAffx.26386.1.S1_at	11/11	4	+	23092886..23093470	hypothetical protein
LOC_Os04g39210	Os.14189.1.S1_s_at	11/11	4	+	23096161..23099742	Agmatine deiminase, putative, expressed
LOC_Os04g39210	OsAffx.26387.1.S1_at	11/11	4	+	23096161..23099742	Agmatine deiminase, putative, expressed
LOC_Os04g39220	Os.19040.1.S1_at	10/11	4	+	23099755..23107680	expressed protein
LOC_Os04g39230	Os.18755.1.S1_at	11/11	4	+	23110763..23111945	expressed protein
LOC_Os04g39240	Os.22379.1.S1_at	10/11	4	+	23112033..23117844	expressed protein

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0006510	biological_process	ATP-dependent proteolysis
GO:0010027	biological_process	thylakoid membrane organization and biogenesis
GO:0010205	biological_process	photoinhibition
GO:0009507	cellular_component	chloroplast
GO:0009535	cellular_component	thylakoid membrane (sensu Viridiplantae)
GO:0004176	molecular_function	ATP-dependent peptidase activity
GO:0008233	molecular_function	peptidase activity
GO:0008237	molecular_function	metallopeptidase activity
GO:0008270	molecular_function	zinc ion binding
GO:0016887	molecular_function	ATPase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.15870.1.S1_s_at--537--909	1	Chr04:23091257..23091281 (25 bp)	TGCTCACGCTGTGGGTGTCGCTGCT	LOC_Os04g39190
Os.15870.1.S1_s_at--608--967	1	Chr04:23091254..23091278 (25 bp)	TCACGCTGTGGGTGTCGCTGCTGCC	LOC_Os04g39190
Os.15870.1.S1_s_at--1055--383	1	Chr04:23091237..23091261 (25 bp)	CTGCTGCCGATGATGTGGTTCATAC	LOC_Os04g39190
Os.15870.1.S1_s_at--871--887	1	Chr04:23091227..23091251 (25 bp)	TGATGTGGTTCATACAGCGGCAGAT	LOC_Os04g39190
Os.15870.1.S1_s_at--395--751	1	Chr04:23091223..23091247 (25 bp)	GTGGTTCATACAGCGGCAGATGTCC	LOC_Os04g39190
Os.15870.1.S1_s_at--969--33	1	Chr04:23091216..23091240 (25 bp)	ATACAGCGGCAGATGTCCGCCGGTG	LOC_Os04g39190
Os.15870.1.S1_s_at--543--941	1	NONE	TCGTCGAGGTAGTGAGTTGCTTGCA	NONE
Os.15870.1.S1_s_at--1132--605	1	Chr04:23090288..23090312 (25 bp)	GAGTTGCTTGCATGGTTCACTGAAC	LOC_Os04g39190
Os.15870.1.S1_s_at--120--667	1	Chr04:23090286..23090310 (25 bp)	GTTGCTTGCATGGTTCACTGAACTA	LOC_Os04g39190
Os.15870.1.S1_s_at--146--789	1	Chr04:23090275..23090299 (25 bp)	GGTTCACTGAACTACAAGAAGCTCG	LOC_Os04g39190
Os.15870.1.S1_s_at--353--241	1	Chr04:23090260..23090284 (25 bp)	AAGAAGCTCGGAGCTAAATTACCCA	LOC_Os04g39190

Target Sequence

TGCTCACGCTGTGGGTGTCGCTGCTGCCGATGATGTGGTTCATACAGCGGCAGATGTCCGCCGGTGGCGGCGCAGAGAAG
CGGCGCCGGCCGAGGAAGCAGCGAGTGGGGTTCGACGATGTCCANGGCGTCGATGAGGCCAAGGAGGAACTCGTCGAGGT
AGTGAGTTGCTTGCATGGTTCACTGAACTACAAGAAGCTCGGAGCTAAATTACCCA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis