Browse Element(s) Details


Os.15893.1.A1_at

Description gb:AK060542.1
DB_XREF= gi:32970560
TID=Os.15893.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.15893 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-021-E06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-021-E06, full insert sequence.
FL= gb:AK060542.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g527009/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g52640Os.27782.1.S1_at11/113+30138771..30142128expressed protein
LOC_Os03g52650OsAffx.3586.1.S1_s_at11/113+30143453..30144678Syntaxin-related protein KNOLLE, putative, expressed
LOC_Os03g52660Os.5148.1.S1_at11/113+30147820..30149331ATP synthase F1, delta subunit family protein, expressed
LOC_Os03g52670Os.37935.1.S1_at11/113+30149372..30150915GRAM domain containing protein, expressed
LOC_Os03g52680Os.18485.1.S1_s_at11/113+30154305..30155477expressed protein
LOC_Os03g52690Os.12286.1.S1_at11/113+30156918..30160996CBS domain containing protein, expressed
LOC_Os03g52690Os.12286.1.S2_a_at11/113+30156918..30160996CBS domain containing protein, expressed
LOC_Os03g52690Os.39828.1.A1_s_at9/113+30156918..30160996CBS domain containing protein, expressed
LOC_Os03g52700Os.15893.1.A1_at9/113+30165974..30170841expressed protein
LOC_Os03g52710OsAffx.13471.1.S1_at11/113+30172325..30174164expressed protein
LOC_Os03g52720Os.53148.1.S1_at11/113+30174754..30176904magnesium-dependent phosphatase-1 family protein, expressed
LOC_Os03g52730Os.21398.1.S1_at11/113+30178817..30180732magnesium-dependent phosphatase-1 family protein, expressed
LOC_Os03g52740Os.35344.3.S1_x_at5/113+30182052..30185223SWIM zinc finger family protein
LOC_Os03g52740Os.35344.18.S1_x_at5/113+30182052..30185223SWIM zinc finger family protein
LOC_Os03g52740OsAffx.22940.5.S1_x_at1/113+30182052..30185223SWIM zinc finger family protein
LOC_Os03g52750Os.3905.1.S1_at11/113+30186454..30191750Cyclin, N-terminal domain containing protein, expressed
LOC_Os03g52760Os.18432.1.A1_s_at11/113+30194828..30197720kinase, pfkB family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009409biological_processresponse to cold
GO:0016481biological_processnegative regulation of transcription
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15893.1.A1_at--681--5551NONE
GAAACCTTTCATCGTAAGTGGCACA
NONE
Os.15893.1.A1_at--291--2131Chr03:30167237..30167262 (25 bp)
ACAGGTGCTGGTCAAATGGTCACTC
LOC_Os03g52700
Os.15893.1.A1_at--670--2971Chr03:30167222..30167247 (25 bp)
AATGGTCACTCAAGATATCCGATAA
LOC_Os03g52700
Os.15893.1.A1_at--1105--7871Chr03:30167193..30167217 (25 bp)
GGTTTTCATGAGGTTCACATCCAGA
LOC_Os03g52700
Os.15893.1.A1_at--69--5971NONE
GAGAATGTTCTCAGCTTTGGTAAGA
NONE
Os.15893.1.A1_at--1115--3431Chr03:30166368..30166392 (25 bp)
CAGTTGATGAAGCACCACCTGGGAA
LOC_Os03g52700
Os.15893.1.A1_at--1087--1091Chr03:30166270..30166294 (25 bp)
AGTGGAGCTTCACTTGCTACTCGAA
LOC_Os03g52700
Os.15893.1.A1_at--789--1951Chr03:30166252..30166276 (25 bp)
ACTCGAAGACGAGCCAGATTTTCTA
LOC_Os03g52700
Os.15893.1.A1_at--375--6511Chr03:30166221..30166245 (25 bp)
GATATATTCCATCTGGTCCAGGTGT
LOC_Os03g52700
Os.15893.1.A1_at--149--2451Chr03:30166058..30166082 (25 bp)
AAAATTTTGGTGTGCCATGGCCGCA
LOC_Os03g52700
Os.15893.1.A1_at--34--7291Chr03:30166047..30166071 (25 bp)
GTGCCATGGCCGCAATGATGTATTG
LOC_Os03g52700
Target Sequence 
GAAACCTTTCATCGTAAGTGGCACAGGTGCTGGTCAAATGGTCACTCAAGATATCCGATAATGCTGGTTTTCATGAGGTT
CACATCCAGAAAACAAAGTACCTCCTAAAGAGAATGTTCTCAGCTTTGGTAAGAAATCTTCAGTTGATGAAGCACCACCT
GGGAAAGGTGTGTCAAGGTGGAGATCCGATGAGTCTAGTGAAGACGAAGATGATAAAAGAACAAGTGGGTATATGGAGAG
TGGAGCTTCACTTGCTACTCGAAGACGAGCCAGATTTTCTAGAAGATGATATATTCCATCTGGTCCAGGTGTTTTNATCG
CGCGCAGGGGACATCTTGTCGAATTCTTTTCCAGACATAATACTTACACCCCNAATGTAACTGCGATTTGTTTGAGGAAA
GGTGCAACTTACCCAATGNTCTTGGGGGAAAAATTGTGGCAACTATATTGCAAAATTTTGGTGTGCCATGGCCGCAATGA
TGTATTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15893.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis