Browse Element(s) Details


Os.16011.1.A1_at

Description gb:AK106895.1
DB_XREF= gi:32992104
TID=Os.16011.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.16011 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-118-G11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-118-G11, full insert sequence.
FL= gb:AK106895.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4399011/11expressed protein
LOC_Os03g587641/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g43940Os.27468.1.S1_at11/116+26470846..26472966expressed protein
LOC_Os06g43950OsAffx.5098.1.S1_at11/116+26477482..26478274expressed protein
LOC_Os06g43960Os.53651.1.S1_at11/116+26481248..26482813expressed protein
LOC_Os06g43960Os.16254.1.S1_at2/116+26481248..26482813expressed protein
LOC_Os06g43970OsAffx.5099.1.S1_at10/116+26488450..26488888hypothetical protein
LOC_Os06g43980Os.51521.1.S1_at11/116+26490477..26493004expressed protein
LOC_Os06g43980Os.51521.1.S2_at10/116+26490477..26493004expressed protein
LOC_Os06g43980OsAffx.15916.1.S1_at1/116+26490477..26493004expressed protein
LOC_Os06g43990Os.16011.1.A1_at11/116+26495540..26497431expressed protein
LOC_Os06g44000OsAffx.28092.1.S1_at11/116+26499618..26500169hypothetical protein
LOC_Os06g44010Os.50015.1.S1_at11/116+26509009..26510702WRKY2 protein, putative, expressed
LOC_Os06g44020OsAffx.15917.1.S1_at11/116+26514060..26515821hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16011.1.A1_at--607--9031Chr06:26496140..26496164 (25 bp)
TGCACGAGCTCCTCCATCAGAGGAA
LOC_Os06g43990
Os.16011.1.A1_at--1062--5351Chr06:26496102..26496126 (25 bp)
GAAGAGCTGGAACTCGCGCTGAAAC
LOC_Os06g43990
Os.16011.1.A1_at--201--3791Chr06:26496015..26496039 (25 bp)
CTCGCGCTGCGACAGGACAGTAGTA
LOC_Os06g43990
Os.16011.1.A1_at--1018--2671Chr06:26495850..26495874 (25 bp)
AAGCTGGCATGCTTCATGTGCGCAA
LOC_Os06g43990
Os.16011.1.A1_at--936--7291Chr06:26495833..26495857 (25 bp)
GTGCGCAATACTGCAATTTGTACAT
LOC_Os06g43990
Os.16011.1.A1_at--114--7611Chr06:26495786..26495810 (25 bp)
GGGCACACACGCAGACACGCTGGAG
LOC_Os06g43990
Os.16011.1.A1_at--246--7531Chr06:26495760..26495784 (25 bp)
GTGGCACTTGCGACGTATTTTTGTA
LOC_Os06g43990
Os.16011.1.A1_at--1045--7392Chr03:33408691..33408713 (23 bp)
GTGTTAGCCTTTCTTAGGTGATCTC
LOC_Os03g58764
Os.16011.1.A1_at--722--151Chr06:26495625..26495649 (25 bp)
ATTAGTCTGACTGATGTCCGGTTCT
LOC_Os06g43990
Os.16011.1.A1_at--564--6271Chr06:26495613..26495637 (25 bp)
GATGTCCGGTTCTATATTTGTTTGT
LOC_Os06g43990
Os.16011.1.A1_at--1061--6971Chr06:26495590..26495614 (25 bp)
GTACCATGTGTACGTCTCTTCGTAT
LOC_Os06g43990
Target Sequence 
TGCACGAGCTCCTCCATCAGAGGAACCAGGAGCGGATCGAAGAGCTGGAACTCGCGCTGAAACGCGCGGAGAAGAAGCTC
GTCGAGAAGGAGATGGAGGTGTCCANTGTGGAAGGACACAGCGAAGCTCGCGCTGCGACAGGACAGTAGTACTATNTTGT
GACATGGTGATTGCAAAGCTGGCATGCTTCATGTGCGCAATACTGCAATTTGTACATGATTTAGGATTATTGCTTCATGG
GGCACACACGCAGACACGCTGGAGCGTGGCACTTGCGACGTATTTTTGTAGAGTTTTACGCCAGTTATAGTGAACNGTTC
ATNCCGAAGTTTAGTGTTAGCCTTTCTTAGGTGATCTCTNAAGCAAGTTTGTTGTTTCGGGTTTGGGGCAAATGCAGTTC
AATTAGTCTGACTGATGTCCGGTTCTATATTTGTTTGTACCATGTGTACGTCTCTTCGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16011.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis