Browse Element(s) Details


Os.1619.1.S1_at

Description gb:AK067964.1
DB_XREF= gi:32977982
TID=Os.1619.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.1619 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative myb-related transcription activator (P0019D06.14), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013124L02, full insert sequence.
FL= gb:AK067964.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0493011/11Myb-like DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g04880Os.5236.1.S1_at11/111+2258287..2263067expressed protein
LOC_Os01g04900Os.27577.1.S1_at11/111+2263083..2267853peptidase M50 family protein, putative, expressed
LOC_Os01g04910Os.1617.1.S1_at11/111+2267965..2270558My019 protein, putative, expressed
LOC_Os01g04920Os.11870.1.S1_at11/111+2271958..2275662glycosyl transferase, group 1 family protein, expressed
LOC_Os01g04930Os.1619.1.S1_at11/111+2278336..2281577Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g04930Os.1619.2.S1_at1/111+2278336..2281577Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g04950Os.4709.1.S1_a_at11/111+2288913..2295131Peptide transporter PTR2, putative, expressed
LOC_Os01g04950Os.49974.1.S1_at11/111+2288913..2295131Peptide transporter PTR2, putative, expressed
LOC_Os01g04950OsAffx.20199.1.S1_x_at1/111+2288913..2295131Peptide transporter PTR2, putative, expressed
LOC_Os01g04960Os.35344.18.S1_x_at11/111+2296539..2302125transposon protein, putative, Mutator sub-class
LOC_Os01g04960Os.35344.3.S1_x_at9/111+2296539..2302125transposon protein, putative, Mutator sub-class
LOC_Os01g04960OsAffx.22940.5.S1_x_at3/111+2296539..2302125transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.1619.1.S1_at--401--7011Chr01:2278896..2278920 (25 bp)
GTACTTCACACATACTTATCCACAG
LOC_Os01g04930
Os.1619.1.S1_at--383--371Chr01:2278867..2278891 (25 bp)
ATCAATTTGCTCATTGGTGCTCCCC
LOC_Os01g04930
Os.1619.1.S1_at--22--10491Chr01:2278772..2278796 (25 bp)
TTACTACTTTCAGTTGCTCATCTAG
LOC_Os01g04930
Os.1619.1.S1_at--379--4831Chr01:2278757..2278781 (25 bp)
GCTCATCTAGTCAACTTTTCTTGTT
LOC_Os01g04930
Os.1619.1.S1_at--617--3151Chr01:2278690..2278714 (25 bp)
AATTCTGTTGCTTGACCTTTGGTTG
LOC_Os01g04930
Os.1619.1.S1_at--116--10191Chr01:2278646..2278670 (25 bp)
TATACTGTATTCTTCTGTGGCTCTA
LOC_Os01g04930
Os.1619.1.S1_at--207--6291Chr01:2278619..2278643 (25 bp)
GATGATGCTACTTCCACCAAAAATG
LOC_Os01g04930
Os.1619.1.S1_at--1097--6651Chr01:2278575..2278599 (25 bp)
GTTGCACTAACTTGGCATCTCATGC
LOC_Os01g04930
Os.1619.1.S1_at--565--3871Chr01:2278492..2278516 (25 bp)
CTGTTATTATTTCCCTCCTTGAGAA
LOC_Os01g04930
Os.1619.1.S1_at--838--2431Chr01:2278402..2278426 (25 bp)
AAAATGCCCAAATGTTGCCTACTCC
LOC_Os01g04930
Os.1619.1.S1_at--275--3811Chr01:2278381..2278405 (25 bp)
CTCCTTCCTTCCCAAATGTAGTTAT
LOC_Os01g04930
Target Sequence 
GTACTTCACACATACTTATCCACAGTTCTATCAATTTGCTCATTGGTGCTCCCCCCATTTGATGTTTGCATAGAATTTAT
TTGGATAAACGGAAAATAAGTTTGCTCTGAGTCATTCAGCATTATTACTACTTTCAGTTGCTCATCTAGTCAACTTTTCT
TGTTTGTAGCTTCATTTTTATAATAAAATAATAACTTCTTTTTTTTAATTCTGTTGCTTGACCTTTGGTTGTTTGTGTGC
AATTAAGTCCTATACTGTATTCTTCTGTGGCTCTATTGATGATGCTACTTCCACCAAAAATGAGATTGGTAATGAGTCAG
AGTTGCACTAACTTGGCATCTCATGCTTTCTCTGCCCCCTTTTCCATCAACTTTATAATTCTTTTTTCCCCCTTCTTTTT
GGCCCTGTTATTATTTCCCTCCTTGAGAAAGGCATCTCAGATATGAGACAGATTTTTGTGACAACAGTAAAGAATAGATC
AGGGAGCAGCATTGAAAATGCCCAAATGTTGCCTACTCCTTCCTTCCCAAATGTAGTTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.1619.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis