Browse Element(s) Details


Os.16237.1.S1_at

Description gb:AK106553.1
DB_XREF= gi:32991762
TID=Os.16237.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.16237 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-108-G08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-108-G08, full insert sequence.
FL= gb:AK073059.1 gb:AK106553.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0299011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g02930Os.57103.1.S1_at11/112+1145837..1151141Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os02g02940Os.5096.1.S1_at9/112+1151848..1154292succinate dehydrogenase subunit 3, putative, expressed
LOC_Os02g02940OsAffx.16354.1.S1_x_at1/112+1151848..1154292succinate dehydrogenase subunit 3, putative, expressed
LOC_Os02g02950Os.56181.1.S1_at11/112+1154674..1156855pentatricopeptide, putative, expressed
LOC_Os02g02960Os.11527.1.S1_at11/112+1158885..1161235histone deacetylase complex subunit SAP18, putative, expressed
LOC_Os02g02970OsAffx.24074.1.S1_at11/112+1162143..1165062PAP/25A associated domain containing protein, expressed
LOC_Os02g02980OsAffx.2490.1.S1_at11/112+1166349..1173540Enhanced disease susceptibility 5, putative, expressed
LOC_Os02g02980Os.51951.1.S1_at1/112+1166349..1173540Enhanced disease susceptibility 5, putative, expressed
LOC_Os02g02990Os.16237.1.S1_at11/112+1173896..1177017expressed protein
LOC_Os02g03000OsAffx.24075.1.S1_at11/112+1178870..1181645division protein, putative, expressed
LOC_Os02g03010OsAffx.24076.1.S1_at11/112+1185112..1186338expressed protein
LOC_Os02g03010OsAffx.24076.1.S1_s_at11/112+1185112..1186338expressed protein
LOC_Os02g03020OsAffx.11871.1.S1_s_at11/112+1187234..1187897calcium-binding protein, putative, expressed
LOC_Os02g03030OsAffx.24077.1.S1_at10/112+1190846..1192461PHD finger family protein, putative
LOC_Os02g03040Os.14104.1.A1_a_at11/112+1193388..1197056Arginine/serine-rich splicing factor RSP41, putative, expressed
LOC_Os02g03050OsAffx.24078.1.S1_at11/112+1198657..1202304ribosomal RNA adenine dimethylase family protein, expressed
LOC_Os02g03050Os.49378.1.S1_at11/112+1198657..1202304ribosomal RNA adenine dimethylase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16237.1.S1_at--19--9111Chr02:1174578..1174686 (25 bp)
TGCGTCCCTATGAGAAAAGCTTCCA
LOC_Os02g02990
Os.16237.1.S1_at--519--4911Chr02:1174560..1174584 (25 bp)
GCTTCCACTATATGGGTCTACTCAA
LOC_Os02g02990
Os.16237.1.S1_at--1063--8891Chr02:1174527..1174551 (25 bp)
TGAGACTTTCCATGGCATCATTGAA
LOC_Os02g02990
Os.16237.1.S1_at--570--5571Chr02:1174490..1174514 (25 bp)
GAAAGATATATCGTCCTCCATTGCA
LOC_Os02g02990
Os.16237.1.S1_at--156--4731Chr02:1174196..1174220 (25 bp)
GCTGTGAGGGAACCGTCATCTTCTA
LOC_Os02g02990
Os.16237.1.S1_at--607--9611Chr02:1174181..1174205 (25 bp)
TCATCTTCTATGTATACCTTGGCAA
LOC_Os02g02990
Os.16237.1.S1_at--1039--6191Chr02:1174115..1174139 (25 bp)
GAGGCACCTGAACACTTGAAACGAT
LOC_Os02g02990
Os.16237.1.S1_at--289--3031Chr02:1174079..1174103 (25 bp)
AATGCCCATTTGTTCGACGTTGATT
LOC_Os02g02990
Os.16237.1.S1_at--249--5771Chr02:1174064..1174088 (25 bp)
GACGTTGATTTTGACTCTCACAGAA
LOC_Os02g02990
Os.16237.1.S1_at--215--5911Chr02:1174016..1174040 (25 bp)
GAGCTCGACACATAGGCGTTTTTTC
LOC_Os02g02990
Os.16237.1.S1_at--427--4371Chr02:1173980..1174004 (25 bp)
CCACATTGTGTTTTTGGTCTGTTCA
LOC_Os02g02990
Target Sequence 
TGCGTCCCTATGAGAAAAGCTTCCACTATATGGGTCTACTCAAGAATGTCATGAGACTTTCCATGGCATCATTGAAAGGT
GCGGATGCGAAAGATATATCGTCCTCCATTGCAGCAATTGCTAATGAAAAGATCAAGGCTGAGAAAGAAGCTGCAGCAGG
CANAAAAGAAACAAGGGGCAAAAAAGAAGCAGCTACACATTGAGAATAAAGACGATGATTTCATCCCTGGAAAGGGTAAT
TTTGATGATCCGGATGAGTACGATTTCATGTGATCGGCTGTGAGGGAACCGTCATCTTCTATGTATACCTTGGCAAGCAG
AGATTAGAGTTTGCGGCATAGTTGGTATTTTCATTCAGAGGCACCTGAACACTTGAAACGATTGCATGGGAACAATGCCC
ATTTGTTCGACGTTGATTTTGACTCTCACAGAATAGGGAAGAGCACCTGTGTGCTCGAGCTCGACACATAGGCGTTTTTT
CTTATTCTTAATCCACATTGTGTTTTTGGTCTGTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16237.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis