Browse Element(s) Details


Os.16523.1.S1_at

Description gb:CA761286
DB_XREF= gi:25805325
DB_XREF=BR060004A20D08.ab1
CLONE=BR060004A20D08.ab1
TID=Os.16523.1
CNT=19
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.16523 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative CTP synthase (P0686E09.12), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4302011/11CTP synthase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g42970Os.1486.1.S1_s_at10/111+24798779..24805279expressed protein
LOC_Os01g42970Os.46377.1.S1_at10/111+24798779..24805279expressed protein
LOC_Os01g42980Os.1487.1.S1_at11/111+24807746..24810562ribosomal protein L22 family protein, putative, expressed
LOC_Os01g42980Os.1487.2.S1_x_at10/111+24807746..24810562ribosomal protein L22 family protein, putative, expressed
LOC_Os01g42990OsAffx.11451.4.S1_x_at11/111+24811397..24814679expressed protein
LOC_Os01g42990Os.33175.1.S1_at11/111+24811397..24814679expressed protein
LOC_Os01g42990OsAffx.11451.3.S1_x_at7/111+24811397..24814679expressed protein
LOC_Os01g42990OsAffx.11451.2.S1_x_at4/111+24811397..24814679expressed protein
LOC_Os01g43000OsAffx.11451.5.S1_x_at11/111+24815746..24818240transposon protein, putative, unclassified
LOC_Os01g43000OsAffx.11451.5.S1_at10/111+24815746..24818240transposon protein, putative, unclassified
LOC_Os01g43010OsAffx.26141.4.S1_at11/111+24818773..24824728hAT family dimerisation domain containing protein, expressed
LOC_Os01g43010OsAffx.26141.4.S1_x_at9/111+24818773..24824728hAT family dimerisation domain containing protein, expressed
LOC_Os01g43010OsAffx.26141.3.S1_x_at9/111+24818773..24824728hAT family dimerisation domain containing protein, expressed
LOC_Os01g43010Os.57359.1.S1_at8/111+24818773..24824728hAT family dimerisation domain containing protein, expressed
LOC_Os01g43010OsAffx.11451.3.S1_x_at1/111+24818773..24824728hAT family dimerisation domain containing protein, expressed
LOC_Os01g43010OsAffx.11451.2.S1_x_at1/111+24818773..24824728hAT family dimerisation domain containing protein, expressed
LOC_Os01g43020Os.16523.1.S1_at11/111+24825687..24831704CTP synthase, putative, expressed
LOC_Os01g43020OsAffx.24925.1.S1_x_at1/111+24825687..24831704CTP synthase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003883molecular_functionCTP synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16523.1.S1_at--12--5191Chr01:24826257..24826281 (25 bp)
GCAATGGCCACGTGGTTTCTACTAA
LOC_Os01g43020
Os.16523.1.S1_at--512--5391Chr01:24826175..24826199 (25 bp)
GAAGCTTGCCAATGGTCTTTCCAAT
LOC_Os01g43020
Os.16523.1.S1_at--1140--2291Chr01:24826130..24826154 (25 bp)
AAATGGCGTGCATGCCTAGTTCTTC
LOC_Os01g43020
Os.16523.1.S1_at--317--3711Chr01:24826115..24826139 (25 bp)
CTAGTTCTTCAGTAGGTGGCCTAAG
LOC_Os01g43020
Os.16523.1.S1_at--938--9291Chr01:24826079..24826103 (25 bp)
TCCCTTTTTGCTGTTTCTATTGAAT
LOC_Os01g43020
Os.16523.1.S1_at--169--5211Chr01:24826058..24826082 (25 bp)
GAATTGCATCAGTTTTGTCGTGGCT
LOC_Os01g43020
Os.16523.1.S1_at--739--4031Chr01:24826028..24826052 (25 bp)
CGTTAATCTTTGGTCGCTCGAGGAA
LOC_Os01g43020
Os.16523.1.S1_at--714--2291Chr01:24825999..24826023 (25 bp)
AAATGTTCTTGTGCTCGATGCGGAC
LOC_Os01g43020
Os.16523.1.S1_at--1133--8171Chr01:24825937..24825961 (25 bp)
GGAACCGGGCTGAATCTCATTGAAG
LOC_Os01g43020
Os.16523.1.S1_at--638--1251Chr01:24825907..24825931 (25 bp)
AGATTGTGGTTTGCGTGTTCGTCCC
LOC_Os01g43020
Os.16523.1.S1_at--404--10271Chr01:24825785..24825809 (25 bp)
TTTGCTTGATAAATGCTGCGCTGGA
LOC_Os01g43020
Target Sequence 
GCAATGGCCACGTGGTTTCTACTAAACATTCTCTGAGCAATGGTGCTTACACATCTACAGTACACCAAAATGGGCACGCA
AAGAAGCTTGCCAATGGTCTTTCCAATGGAACATATTATCCCAATGGAAATGGCGTGCATGCCTAGTTCTTCAGTAGGTG
GCCTAAGGATTTACACATTCCCTTTTTGCTGTTTCTATTGAATTGCATCAGTTTTGTCGTGGCTGGCCTCGTTAATCTTT
GGTCGCTCGAGGAAGAAAAAATGTTCTTGTGCTCGATGCGGACTGTGCGAAGGATGGTGCTCGTTCGGTGGGTTTTTGAA
GGAACCGGGCTGAATCTCATTGAAGGTGTGAGATTGTGGTTTGCGTGTTCGTCCCTACCCTTTTCTGTAAGCCAAGGGGG
GCAGAAGTGGGTAAGAAGANTTCTCATGCTGTATATCTGGAAAGAAAAGAAATGCTGGATGTTTTTGTTCTTTTTGCTTG
ATAAATGCTGCGCTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16523.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis